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Jonathan R. Karr · Study
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Author
Jonathan R. Karr
10 works
· latest 2024
· 2 institutions
cluster: provisional
ORCID 0000-0002-2605-5080
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Citations
225
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Most cited in this library
Best Practices for Making Reproducible Biochemical Models
2020 · 45 citations
WholeCellSimDB: a hybrid relational/HDF database for whole-cell model predictions
2014 · 42 citations
Guidelines for Reproducibly Building and Simulating Systems Biology Models
2016 · 29 citations
RunBioSimulations: an extensible web application that simulates a wide range of computational modeling frameworks, algorithms, and formats
2021 · 21 citations
The simulation experiment description markup language (SED-ML): language specification for level 1 version 4
2021 · 17 citations
Works
10 shown
The simulation experiment description markup language (SED-ML): language specification for level 1 version 5
Berichte aus der medizinischen Informatik und Bioinformatik/Journal of integrative bioinformatics
·
2024
·
9 authors
·
Open access
7
citations
Model Integration in Computational Biology: The Role of Reproducibility, Credibility and Utility
Frontiers in Systems Biology
·
2022
·
18 authors
·
Open access
17
citations
The simulation experiment description markup language (SED-ML): language specification for level 1 version 4
Berichte aus der medizinischen Informatik und Bioinformatik/Journal of integrative bioinformatics
·
2021
·
9 authors
·
Open access
17
citations
Practical resources for enhancing the reproducibility of mechanistic modeling in systems biology
Current Opinion in Systems Biology
·
2021
·
6 authors
·
review
·
Open access
14
citations
RunBioSimulations: an extensible web application that simulates a wide range of computational modeling frameworks, algorithms, and formats
Nucleic Acids Research
·
2021
·
6 authors
·
Open access
21
citations
Best Practices for Making Reproducible Biochemical Models
Cell Systems
·
2020
·
6 authors
·
review
·
Open access
45
citations
Guidelines for Reproducibly Building and Simulating Systems Biology Models
IEEE Transactions on Biomedical Engineering
·
2016
·
3 authors
·
Open access
29
citations
DREAMTools: a Python package for scoring collaborative challenges
F1000Research
·
2016
·
22 authors
·
other
·
Open access
17
citations
DREAMTools: a Python package for scoring collaborative challenges
F1000Research
·
2015
·
20 authors
·
other
·
Open access
16
citations
WholeCellSimDB: a hybrid relational/HDF database for whole-cell model predictions
Database
·
2014
·
2 authors
·
Open access
42
citations