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Using Galaxy to Perform Large‐Scale Interactive Data Analyses
4 references·12 citing·25 second hop
Using Galaxy to Perform Large‐Scale Interactive Data Analyses (2007)Using Galaxy to Perform Large‐Scale Inter…Galaxy: A Web‐Based Genome Analysis Tool for Experimentalists (2010)Galaxy: A Web‐Based Genome An…Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences (2010)Galaxy: a comprehensive appro…A framework for collaborative analysis of ENCODE data: Making large-scale analyses biologist-friendly (2007)A framework for collaborative…Galaxy: A platform for interactive large-scale genome analysis (2005)Galaxy: A platform for intera…GalaxyTrakr: a distributed analysis tool for public health whole genome sequence data accessible to non-bioinformaticians (2021)GalaxyTrakr: a distributed an…Watchdog 2.0: New developments for reusability, reproducibility, and workflow execution (2020)Watchdog 2.0: New development…Watchdog – a workflow management system for the distributed analysis of large-scale experimental data (2018)Watchdog – a workflow managem…Bringing numerous methods for expression and promoter analysis to a public cloud computing service (2017)Bringing numerous methods for…Guidelines for Reproducibly Building and Simulating Systems Biology Models (2016)Guidelines for Reproducibly B…Big Data Smart Socket (BDSS): a system that abstracts data transfer habits from end users (2016)Big Data Smart Socket (BDSS):…Advantages and Limits in the Adoption of Reproducible Research and R-Tools for the Analysis of Omic Data (2016)Advantages and Limits in the …High-Throughput Translational Medicine: Challenges and Solutions (2013)High-Throughput Translational…Integrating diverse databases into an unified analysis framework: a Galaxy approach (2011)Integrating diverse databases…Galaxy: A Gateway to Tools in e-Science (2011)Galaxy: A Gateway to Tools in…StarFlow: A Script-Centric Data Analysis Environment (2010)StarFlow: A Script-Centric Da…Semantically-Guided Workflow Construction in Taverna: The SADI and BioMoby Plug-Ins (2010)Semantically-Guided Workflow …Applying KAoS Services to Ensure Policy Compliance for Semantic Web Services Workflow Composition and Enactment (2004)Taverna: lessons in creating a workflow environment for the life sciences (2005)Mobyle: a new full web bioinformatics framework (2009)Scientific Workflows and XMDD (2014)Scientific workflows with the jABC framework (2016)Design Patterns: Elements of Reusable Object-Oriented Software (1994)Bioconductor: open software development for computational biology and bioinformatics (2004)The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2016 update (2016)Asynchronous distributed simulation via a sequence of parallel computations (1981)Taverna: a tool for the composition and enactment of bioinformatics workflows (2004)VisTrails (2006)The iPlant Collaborative: Cyberinfrastructure for Plant Biology (2011)KNIME: The Konstanz Information Miner (2008)Snakemake—a scalable bioinformatics workflow engine (2012)Nextflow enables reproducible computational workflows (2017)The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2018 update (2018)Accelerating bioinformatics implementation in public health (2023)Launching genomics into the cloud: deployment of Mercury, a next generation sequence analysis pipeline (2014)Managing, Analysing, and Integrating Big Data in Medical Bioinformatics: Open Problems and Future Perspectives (2014)Towards reproducible computational drug discovery (2020)Common motifs in scientific workflows: An empirical analysis (2013)Integrated Systems for NGS Data Management and Analysis: Open Issues and Available Solutions (2016)Designing Integrated Computational Biology Pipelines Visually (2013)Bioportainer Workbench: a versatile and user-friendly system that integrates implementation, management, and use of bioinformatics resources in Docker environments (2019)The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2022 update (2022)
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References

  • 2010Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences3,455 cited
  • 2005Galaxy: A platform for interactive large-scale genome analysis2,027 cited
  • 2010Galaxy: A Web‐Based Genome Analysis Tool for Experimentalists1,430 cited
  • 2007A framework for collaborative analysis of ENCODE data: Making large-scale analyses biologist-friendly158 cited

Cited by

  • 2017Bringing numerous methods for expression and promoter analysis to a public cloud computing service113 cited
  • 2021GalaxyTrakr: a distributed analysis tool for public health whole genome sequence data accessible to non-bioinformaticians92 cited
  • 2011Integrating diverse databases into an unified analysis framework: a Galaxy approach62 cited
  • 2010Semantically-Guided Workflow Construction in Taverna: The SADI and BioMoby Plug-Ins33 cited
  • 2018Watchdog – a workflow management system for the distributed analysis of large-scale experimental data30 cited
  • 2016Guidelines for Reproducibly Building and Simulating Systems Biology Models29 cited
  • 2010StarFlow: A Script-Centric Data Analysis Environment26 cited
  • 2011Galaxy: A Gateway to Tools in e-Science26 cited
  • 2020Watchdog 2.0: New developments for reusability, reproducibility, and workflow execution11 cited
  • 2013

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High-Throughput Translational Medicine: Challenges and Solutions
11 cited
  • 2016Big Data Smart Socket (BDSS): a system that abstracts data transfer habits from end users9 cited
  • 2016Advantages and Limits in the Adoption of Reproducible Research and R-Tools for the Analysis of Omic Data9 cited