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Use of semantic workflows to enhance transparency and reproducibility in clinical omics
13 references·0 citing·33 second hop
Use of semantic workflows to enhance transparency and reproducibility in clinical omics (2015)Use of semantic workflows to enhance tran…Quantifying Reproducibility in Computational Biology: The Case of the Tuberculosis Drugome (2013)Quantifying Reproducibility i…Augmenting PROV with Plans in P-PLAN: Scientific Processes as Linked Data (2012)Augmenting PROV with Plans in…CrowdLabs: Social Analysis and Visualization for the Sciences (2011)CrowdLabs: Social Analysis an…A semantic framework for automatic generation of computational workflows using distributed data and component catalogues (2011)A semantic framework for auto…A new approach for publishing workflows (2011)A new approach for publishing…Wings: Intelligent Workflow-Based Design of Computational Experiments (2010)Wings: Intelligent Workflow-B…The Open Provenance Model core specification (v1.1) (2010)The Open Provenance Model cor…Efficient, Distributed and Interactive Neuroimaging Data Analysis using the LONI Pipeline (2009)Efficient, Distributed and In…The design and realisation of the Virtual Research Environment for social sharing of workflows (2008)The design and realisation of…Wings for Pegasus: creating large-scale scientific applications using semantic representations of computational workflows (2007)Wings for Pegasus: creating l…Galaxy: A platform for interactive large-scale genome analysis (2005)Galaxy: A platform for intera…Taverna: a tool for the composition and enactment of bioinformatics workflows (2004)Taverna: a tool for the compo…Bioconductor: open software development for computational biology and bioinformatics (2004)Bioconductor: open software d…A survey of data provenance in e-science (2005)Scientific workflow management and the Kepler system (2005)Taverna: lessons in creating a workflow environment for the life sciences (2005)Neuroimaging Study Designs, Computational Analyses and Data Provenance Using the LONI Pipeline (2010)The link between callosal thickness and intelligence in healthy children and adolescents (2010)The pipeline system for Octave and Matlab (PSOM): a lightweight scripting framework and execution engine for scientific workflows (2012)Examining the Challenges of Scientific Workflows (2007)Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences (2010)On Reproducible AI: Towards Reproducible Research, Open Science, and Digital Scholarship in AI Publications (2018)Sharing interoperable workflow provenance: A review of best practices and their practical application in CWLProv (2019)The five pillars of computational reproducibility: bioinformatics and beyond (2023)Taverna: a tool for building and running workflows of services (2006)Similarity assessment and efficient retrieval of semantic workflows (2012)Using a suite of ontologies for preserving workflow-centric research objects (2015)Workflows For E-Science: Scientific Workflows For Grids (2007)Efficient provenance storage over nested data collections (2009)Scientific Process Automation and Workflow Management (2009)Workflow Systems for Science: Concepts and Tools (2013)myExperiment: a repository and social network for the sharing of bioinformatics workflows (2010)4 What Is Web 2.0? Design Patterns and Business Models for the Next Generation of Software (2012)Scientific workflows for computational reproducibility in the life sciences: Status, challenges and opportunities (2017)D-PROV: extending the PROV provenance model with workflow structure (2013)Recording provenance of workflow runs with RO-Crate (2024)SPADE: Support for Provenance Auditing in Distributed Environments (2012)AiiDA: automated interactive infrastructure and database for computational science (2015)A survey on provenance: What for? What form? What from? (2017)Text Mining Infrastructure in R (2008)A Draft Sequence of the Neandertal Genome (2010)The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2016 update (2016)The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2018 update (2018)The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2022 update (2022)Workflows and e-Science: An overview of workflow system features and capabilities (2008)Ten Simple Rules for Reproducible Computational Research (2013)
this work references cited by second hop

References

  • 2004Bioconductor: open software development for computational biology and bioinformatics12,180 cited
  • 2005Galaxy: A platform for interactive large-scale genome analysis2,027 cited
  • 2004Taverna: a tool for the composition and enactment of bioinformatics workflows1,602 cited
  • 2010The Open Provenance Model core specification (v1.1)706 cited
  • 2008The design and realisation of the Virtual Research Environment for social sharing of workflows432 cited
  • 2010Wings: Intelligent Workflow-Based Design of Computational Experiments201 cited
  • 2009Efficient, Distributed and Interactive Neuroimaging Data Analysis using the LONI Pipeline147 cited
  • 2007Wings for Pegasus: creating large-scale scientific applications using semantic representations of computational workflows123 cited
  • 2013Quantifying Reproducibility in Computational Biology: The Case of the Tuberculosis Drugome116 cited
  • 2011A new approach for publishing workflows78 cited
  • 2012Augmenting PROV with Plans in P-PLAN: Scientific Processes as Linked Data68 cited
  • 2011A semantic framework for automatic generation of computational workflows using distributed data and component catalogues65 cited
  • 2011CrowdLabs: Social Analysis and Visualization for the Sciences54 cited

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