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Parallelization in Scientific Workflow Management Systems
16 references·2 citing·36 second hop
Parallelization in Scientific Workflow Management Systems (2013)Parallelization in Scientific Workflow Ma…Tavaxy: Integrating Taverna and Galaxy workflows with cloud computing support (2012)Tavaxy: Integrating Taverna a…Conveyor: a workflow engine for bioinformatic analyses (2011)Conveyor: a workflow engine f…CloVR: A virtual machine for automated and portable sequence analysis from the desktop using cloud computing (2011)CloVR: A virtual machine for …An algebraic approach for data-centric scientific workflows (2011)An algebraic approach for dat…Taverna, Reloaded (2010)Taverna, ReloadedGalaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences (2010)Galaxy: a comprehensive appro…Mobyle: a new full web bioinformatics framework (2009)Mobyle: a new full web bioinf…Workflows and e-Science: An overview of workflow system features and capabilities (2008)Workflows and e-Science: An o…Scientific Workflow: A Survey and Research Directions (2008)Scientific Workflow: A Survey…KNIME: The Konstanz Information Miner (2008)KNIME: The Konstanz Informati…Workflow automation for processing plasma fusion simulation data (2007)Workflow automation for proce…myExperiment (2007)myExperimentImproving the analysis, storage and sharing of neuroimaging data using relational databases and distributed computing (2007)Improving the analysis, stora…A Case Study on the Use of Workflow Technologies for Scientific Analysis: Gravitational Wave Data Analysis (2007)A Case Study on the Use of Wo…Adapters, shims, and glue—service interoperability for in silico experiments (2006)Adapters, shims, and glue—ser…Taverna: a tool for the composition and enactment of bioinformatics workflows (2004)Taverna: a tool for the compo…BeeFlow: A Workflow Management System for In Situ Processing across HPC and Cloud Systems (2018)BeeFlow: A Workflow Managemen…SAASFEE (2015)SAASFEEYAWL: yet another workflow language (2004)Scientific workflow management and the Kepler system (2005)Neuroimaging Study Designs, Computational Analyses and Data Provenance Using the LONI Pipeline (2010)Elastic Business Process Management: State of the art and open challenges for BPM in the cloud (2014)A characterization of workflow management systems for extreme-scale applications (2017)Taverna: a tool for building and running workflows of services (2006)Computational solutions to large-scale data management and analysis (2010)Shiny-phyloseq: Web application for interactive microbiome analysis with provenance tracking (2014)Nephele: a cloud platform for simplified, standardized and reproducible microbiome data analysis (2017)Scalability and Validation of Big Data Bioinformatics Software (2017)Design Patterns: Elements of Reusable Object-Oriented Software (1994)Bioconductor: open software development for computational biology and bioinformatics (2004)Snakemake—a scalable bioinformatics workflow engine (2012)The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2016 update (2016)Nextflow enables reproducible computational workflows (2017)Kepler: An Extensible System for Design and Execution of Scientific Workflows (2004)Galaxy: A platform for interactive large-scale genome analysis (2005)Next-generation sequencing data interpretation: enhancing reproducibility and accessibility (2012)Genomics Virtual Laboratory: A Practical Bioinformatics Workbench for the Cloud (2015)GalaxyTrakr: a distributed analysis tool for public health whole genome sequence data accessible to non-bioinformaticians (2021)Workflow Patterns (2003)Why workflows break — Understanding and combating decay in Taverna workflows (2012)OpenMOLE, a workflow engine specifically tailored for the distributed exploration of simulation models (2013)A systematic review of provenance systems (2018)Scientific workflows for bibliometrics (2016)Reproducible, scalable, and shareable analysis pipelines with bioinformatics workflow managers (2021)Sustainable data analysis with Snakemake (2021)Designing the myExperiment Virtual Research Environment for the Social Sharing of Workflows (2007)Data curation + process curation=data integration + science (2008)Scientific Workflows: Business as Usual? (2009)Geospatial Cyberinfrastructure: Past, present and future (2010)Reproducibility in Scientific Computing (2018)Ten Simple Rules for Reproducible Computational Research (2013)Provenance: The Bridge Between Experiments and Data (2008)Scientific workflows and clouds (2010)Understanding the scientific software ecosystem and its impact: Current and future measures (2015)
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References

  • 2010Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences3,455 cited
  • 2004Taverna: a tool for the composition and enactment of bioinformatics workflows1,602 cited
  • 2008KNIME: The Konstanz Information Miner1,401 cited
  • 2008Workflows and e-Science: An overview of workflow system features and capabilities832 cited
  • 2009Mobyle: a new full web bioinformatics framework310 cited
  • 2011CloVR: A virtual machine for automated and portable sequence analysis from the desktop using cloud computing282 cited
  • 2008Scientific Workflow: A Survey and Research Directions243 cited
  • 2010Taverna, Reloaded153 cited
  • 2007A Case Study on the Use of Workflow Technologies for Scientific Analysis: Gravitational Wave Data Analysis132 cited
  • 2007myExperiment121 cited
  • 2012Tavaxy: Integrating Taverna and Galaxy workflows with cloud computing support120 cited
  • 2011An algebraic approach for data-centric scientific workflows116 cited
  • 2007Improving the analysis, storage and sharing of neuroimaging data using relational databases and distributed computing43 cited
  • 2011Conveyor: a workflow engine for bioinformatic analyses39 cited
  • 2006

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Adapters, shims, and glue—service interoperability for in silico experiments
39 cited
  • 2007Workflow automation for processing plasma fusion simulation data31 cited
  • Cited by

    • 2015SAASFEE23 cited
    • 2018BeeFlow: A Workflow Management System for In Situ Processing across HPC and Cloud Systems14 cited