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Challenges and approaches for distributed workflow-driven analysis of large-scale biological data
7 references·5 citing·28 second hop
Challenges and approaches for distributed workflow-driven analysis of large-scale biological data (2012)Challenges and approaches for distributed…Kepler + Hadoop (2009)Kepler + HadoopA MapReduce-Enabled Scientific Workflow Composition Framework (2009)A MapReduce-Enabled Scientifi…Heterogeneous composition of models of computation (2008)Heterogeneous composition of …Composing Different Models of Computation in Kepler and Ptolemy II (2007)Composing Different Models of…Provenance Collection Support in the Kepler Scientific Workflow System (2006)Provenance Collection Support…Taverna: a tool for the composition and enactment of bioinformatics workflows (2004)Taverna: a tool for the compo…Kepler: An Extensible System for Design and Execution of Scientific Workflows (2004)Kepler: An Extensible System …BioWorkbench: a high-performance framework for managing and analyzing bioinformatics experiments (2018)BioWorkbench: a high-performa…A Kepler Workflow Tool for Reproducible AMBER GPU Molecular Dynamics (2017)A Kepler Workflow Tool for Re…Cytoscape: the network visualization tool for GenomeSpace workflows (2014)Cytoscape: the network visual…Approaches to Distributed Execution of Scientific Workflows in Kepler (2013)Approaches to Distributed Exe…A Framework for Distributed Data-Parallel Execution in the Kepler Scientific Workflow System (2012)A Framework for Distributed D…Scientific workflow management and the Kepler system (2005)BioExtract Server—An Integrated Workflow-Enabling System to Access and Analyze Heterogeneous, Distributed Biomolecular Data (2008)Discovering Scientific Workflows: The myExperiment Benchmarks (2008)Human Information Processing (2016)The role of machine learning in scientific workflows (2019)A survey of data provenance in e-science (2005)Taverna: lessons in creating a workflow environment for the life sciences (2005)Scientific workflow design for mere mortals (2008)A Reference Architecture for Scientific Workflow Management Systems and the VIEW SOA Solution (2009)Layering in provenance systems (2009)Kepler: an extensible system for design and execution of scientific workflows (2004)Taverna: a tool for building and running workflows of services (2006)Big Data Analytics on Large-Scale Scientific Datasets in the INDIGO-DataCloud Project (2017)Examining the Challenges of Scientific Workflows (2007)Big Data Applications Using Workflows for Data Parallel Computing (2014)YAWL: yet another workflow language (2004)A Dataflow-Based Scientific Workflow Composition Framework (2010)Towards Reliable, Performant Workflows for Streaming-Applications on Cloud Platforms (2011)Provenance for MapReduce-based data-intensive workflows (2011)Chiron: a parallel engine for algebraic scientific workflows (2013)Crossing analytics systems: A case for integrated provenance in data lakes (2016)Design and Implementation of Kepler Workflows for BioEarth (2014)Mobyle: a new full web bioinformatics framework (2009)The iPlant Collaborative: Cyberinfrastructure for Plant Biology (2011)FireWorks: a dynamic workflow system designed for high‐throughput applications (2015)Workflows and e-Science: An overview of workflow system features and capabilities (2008)Ten Simple Rules for Reproducible Computational Research (2013)Toward a Methodology and Framework for Workflow-Driven Team Science (2019)
this work references cited by second hop

References

  • 2004Taverna: a tool for the composition and enactment of bioinformatics workflows1,602 cited
  • 2004Kepler: An Extensible System for Design and Execution of Scientific Workflows745 cited
  • 2006Provenance Collection Support in the Kepler Scientific Workflow System272 cited
  • 2009Kepler + Hadoop101 cited
  • 2008Heterogeneous composition of models of computation62 cited
  • 2009A MapReduce-Enabled Scientific Workflow Composition Framework46 cited
  • 2007Composing Different Models of Computation in Kepler and Ptolemy II43 cited

Cited by

  • 2017A Kepler Workflow Tool for Reproducible AMBER GPU Molecular Dynamics29 cited
  • 2012A Framework for Distributed Data-Parallel Execution in the Kepler Scientific Workflow System21 cited
  • 2013Approaches to Distributed Execution of Scientific Workflows in Kepler16 cited
  • 2014Cytoscape: the network visualization tool for GenomeSpace workflows16 cited
  • 2018BioWorkbench: a high-performance framework for managing and analyzing bioinformatics experiments15 cited

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