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Heterogeneous biological data integration with declarative query language
8 references·0 citing·28 second hop
Heterogeneous biological data integration with declarative query language (2014)Heterogeneous biological data integration…The Taverna workflow suite: designing and executing workflows of Web Services on the desktop, web or in the cloud (2013)The Taverna workflow suite: d…The big challenges of big data (2013)The big challenges of big dataJBioWH: an open-source Java framework for bioinformatics data integration (2013)JBioWH: an open-source Java f…BioMart: driving a paradigm change in biological data management (2011)BioMart: driving a paradigm c…Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences (2010)Galaxy: a comprehensive appro…The Power of Declarative Languages: A Comparative Exposition of Scientific Workflow Design Using BioFlow and Taverna (2009)The Power of Declarative Lang…BioFlow: A Web-Based Declarative Workflow Language for Life Sciences (2008)BioFlow: A Web-Based Declarat…BioMoby extensions to the Taverna workflow management and enactment software (2006)BioMoby extensions to the Tav…BioMOBY: An open source biological web services proposal (2002)Taverna: a tool for the composition and enactment of bioinformatics workflows (2004)Taverna: a tool for building and running workflows of services (2006)Automation of in-silico data analysis processes through workflow management systems (2007)Performing statistical analyses on quantitative data in Taverna workflows: An example using R and maxdBrowse to identify differentially-expressed genes from microarray data (2008)Analysing Scientific Workflows: Why Workflows Not Only Connect Web Services (2009)The Data Warehouse Lifecycle Toolkit : Expert Methods for Designing, Developing, and Deploying Data Warehouses (1998)Facilitating the use of large-scale biological data and tools in the era of translational bioinformatics (2013)Tools and data services registry: a community effort to document bioinformatics resources (2015)Bioinformatics software development: Principles and future directions (2024)Design Patterns: Elements of Reusable Object-Oriented Software (1994)Bioconductor: open software development for computational biology and bioinformatics (2004)Snakemake—a scalable bioinformatics workflow engine (2012)The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2016 update (2016)Nextflow enables reproducible computational workflows (2017)Kepler: An Extensible System for Design and Execution of Scientific Workflows (2004)Kepler: an extensible system for design and execution of scientific workflows (2004)A Visual Interface for on-the-fly Biological Database Integration and Workflow Design Using VizBuilder (2009)A dynamic warehouse for XML Data of the Web. (2001)Scientific workflow management by database management (2002)Integrating databases and workflow systems (2005)A declarative language and toolkit for scientific workflow implementation and execution (2010)AiiDA: automated interactive infrastructure and database for computational science (2015)A review of bioinformatic pipeline frameworks (2016)BioContainers: an open-source and community-driven framework for software standardization (2017)Visualizing and interacting with large-volume biodiversity data using client–server web-mapping applications: The design and implementation of antmaps.org (2016)Next-Generation Big Data Analytics: State of the Art, Challenges, and Future Research Topics (2017)From conventional group decision making to large-scale group decision making: What are the challenges and how to meet them in big data era? A state-of-the-art survey (2019)
this work references cited by second hop

References

  • 2010Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences3,455 cited
  • 2013The big challenges of big data1,232 cited
  • 2013The Taverna workflow suite: designing and executing workflows of Web Services on the desktop, web or in the cloud678 cited
  • 2011BioMart: driving a paradigm change in biological data management316 cited
  • 2006BioMoby extensions to the Taverna workflow management and enactment software71 cited
  • 2008BioFlow: A Web-Based Declarative Workflow Language for Life Sciences20 cited
  • 2009The Power of Declarative Languages: A Comparative Exposition of Scientific Workflow Design Using BioFlow and Taverna14 cited
  • 2013JBioWH: an open-source Java framework for bioinformatics data integration9 cited

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