SZodixStudyAcademic Library
ShelvesOpen access
Study · an open academic library·Metadata from OpenAlex (CC0)·Shelves·OpenAlex metadata, de-duplicated
In silico research in the era of cloud computing
8 references·16 citing·42 second hop
In silico research in the era of cloud computing (2010)In silico research in the era of cloud co…Accessible Reproducible Research (2010)Accessible Reproducible Resea…The design and realisation of the Virtual Research Environment for social sharing of workflows (2008)The design and realisation of…Scientific Workflow: A Survey and Research Directions (2008)Scientific Workflow: A Survey…Examining the Challenges of Scientific Workflows (2007)Examining the Challenges of S…Taverna: a tool for building and running workflows of services (2006)Taverna: a tool for building …Reproducible Research: A Bioinformatics Case Study (2005)Reproducible Research: A Bioi…Galaxy: A platform for interactive large-scale genome analysis (2005)Galaxy: A platform for intera…Making scientific computations reproducible (2000)Making scientific computation…Reasons, challenges, and some tools for doing reproducible transportation research (2021)Reasons, challenges, and some…The Workflow Trace Archive: Open-Access Data From Public and Private Computing Infrastructures (2020)The Workflow Trace Archive: O…Successes and Struggles with Computational Reproducibility: Lessons from the Fragile Families Challenge (2019)Successes and Struggles with …Jug: Software for Parallel Reproducible Computation in Python (2017)Jug: Software for Parallel Re…Emerging trend of big data analytics in bioinformatics: a literature review (2017)Emerging trend of big data an…Bioinformatics from a Big Data Perspective: Meeting the Challenge (2017)Bioinformatics from a Big Dat…Use of application containers and workflows for genomic data analysis (2016)Use of application containers…AlgoRun: a Docker-based packaging system for platform-agnostic implemented algorithms (2016)AlgoRun: a Docker-based packa…IPOL: A new journal for fully reproducible research; analysis of four years development (2015)IPOL: A new journal for fully…Genomics Virtual Laboratory: A Practical Bioinformatics Workbench for the Cloud (2015)Genomics Virtual Laboratory: …Challenges of Large-Scale Biomedical Workflows on the Cloud -- A Case Study on the Need for Reproducibility of Results (2015)Challenges of Large-Scale Bio…An automated real-time integration and interoperability framework for bioinformatics (2015)An automated real-time integr…Reproducible Software Appliances for Experimentation (2014)Reproducible Software Applian…Towards Reproducible eScience in the Cloud (2011)Towards Reproducible eScience…The Collage Authoring Environment (2011)The Collage Authoring Environ…Leveraging business workflows in distributed systems research for the orchestration of reproducible and scalable experiments (2011)Leveraging business workflows…Taverna: a tool for the composition and enactment of bioinformatics workflows (2004)YAWL: yet another workflow language (2004)Scientific workflow management and the Kepler system (2005)Neuroimaging Study Designs, Computational Analyses and Data Provenance Using the LONI Pipeline (2010)Elastic Business Process Management: State of the art and open challenges for BPM in the cloud (2014)A characterization of workflow management systems for extreme-scale applications (2017)WaveLab and Reproducible Research (1995)Statistical Analyses and Reproducible Research (2007)myExperiment: a repository and social network for the sharing of bioinformatics workflows (2010)CloVR: A virtual machine for automated and portable sequence analysis from the desktop using cloud computing (2011)Next-generation sequencing data interpretation: enhancing reproducibility and accessibility (2012)How Web 2.0 is changing medicine (2006)Designing the myExperiment Virtual Research Environment for the Social Sharing of Workflows (2007)4 What Is Web 2.0? Design Patterns and Business Models for the Next Generation of Software (2012)Bringing Digital Science Deep Inside the Scientific Article: the Elsevier Article of the Future Project (2014)Bridging the Chasm (2017)The Popper Convention: Making Reproducible Systems Evaluation Practical (2017)Workflows For E-Science: Scientific Workflows For Grids (2007)Data Management Challenges of Data-Intensive Scientific Workflows (2008)The Open Provenance Model: An Overview (2008)GeoAI: spatially explicit artificial intelligence techniques for geographic knowledge discovery and beyond (2019)Taverna: lessons in creating a workflow environment for the life sciences (2005)Wings: Intelligent Workflow-Based Design of Computational Experiments (2010)Scientific workflows for computational reproducibility in the life sciences: Status, challenges and opportunities (2017)Bioconductor: open software development for computational biology and bioinformatics (2004)Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences (2010)Reproducible Research in Computational Science (2011)Integrated Systems for NGS Data Management and Analysis: Open Issues and Available Solutions (2016)Integration and Visualization of Translational Medicine Data for Better Understanding of Human Diseases (2016)Investigating reproducibility and tracking provenance – A genomic workflow case study (2017)Characterization of scientific workflows (2008)The iPlant Collaborative: Cyberinfrastructure for Plant Biology (2011)The Taverna workflow suite: designing and executing workflows of Web Services on the desktop, web or in the cloud (2013)Reporting guidelines for simulation‐based research in social sciences (2012)Reproducibility in Scientific Computing (2018)Towards reproducible computational drug discovery (2020)Guest Editors' Introduction: Reproducible Research (2008)Accounting for Spatial Autocorrelation in Linear Regression Models Using Spatial Filtering with Eigenvectors (2012)Packaging Data Analytical Work Reproducibly Using R (and Friends) (2017)The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2016 update (2016)The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2018 update (2018)The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2022 update (2022)
this work references cited by second hop

References

  • 2005Galaxy: A platform for interactive large-scale genome analysis2,027 cited
  • 2006Taverna: a tool for building and running workflows of services944 cited
  • 2007Examining the Challenges of Scientific Workflows517 cited
  • 2008The design and realisation of the Virtual Research Environment for social sharing of workflows432 cited
  • 2010Accessible Reproducible Research308 cited
  • 2008Scientific Workflow: A Survey and Research Directions243 cited
  • 2000Making scientific computations reproducible226 cited
  • 2005Reproducible Research: A Bioinformatics Case Study138 cited

Cited by

  • 2015Genomics Virtual Laboratory: A Practical Bioinformatics Workbench for the Cloud118 cited
  • 2011The Collage Authoring Environment65 cited
  • 2019Successes and Struggles with Computational Reproducibility: Lessons from the Fragile Families Challenge47 cited
  • 2021Reasons, challenges, and some tools for doing reproducible transportation research43 cited
  • 2016AlgoRun: a Docker-based packaging system for platform-agnostic implemented algorithms42 cited
  • 2017Jug: Software for Parallel Reproducible Computation in Python39 cited
  • 2020The Workflow Trace Archive: Open-Access Data From Public and Private Computing Infrastructures

Only edges whose both ends are imported exist here. Widen the year window, or show the whole map. Back to the work

36 cited
  • 2016Use of application containers and workflows for genomic data analysis35 cited
  • 2017Emerging trend of big data analytics in bioinformatics: a literature review16 cited
  • 2011Towards Reproducible eScience in the Cloud14 cited
  • 2015IPOL: A new journal for fully reproducible research; analysis of four years development13 cited
  • 2014Reproducible Software Appliances for Experimentation10 cited
  • 2015An automated real-time integration and interoperability framework for bioinformatics9 cited
  • 2017Bioinformatics from a Big Data Perspective: Meeting the Challenge8 cited
  • 2015Challenges of Large-Scale Biomedical Workflows on the Cloud -- A Case Study on the Need for Reproducibility of Results7 cited
  • 2011Leveraging business workflows in distributed systems research for the orchestration of reproducible and scalable experiments7 cited