SZodixStudyAcademic Library
ShelvesOpen access
Study · an open academic library·Metadata from OpenAlex (CC0)·Shelves·OpenAlex metadata, de-duplicated
Common motifs in scientific workflows: An empirical analysis
12 references·16 citing·35 second hop
Common motifs in scientific workflows: An empirical analysis (2013)Common motifs in scientific workflows: An…The Taverna workflow suite: designing and executing workflows of Web Services on the desktop, web or in the cloud (2013)The Taverna workflow suite: d…Wings: Intelligent Workflow-Based Design of Computational Experiments (2010)Wings: Intelligent Workflow-B…Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences (2010)Galaxy: a comprehensive appro…Workflows and e-Science: An overview of workflow system features and capabilities (2008)Workflows and e-Science: An o…The design and realisation of the Virtual Research Environment for social sharing of workflows (2008)The design and realisation of…Querying and re-using workflows with VsTrails (2008)Querying and re-using workflo…A framework for collaborative analysis of ENCODE data: Making large-scale analyses biologist-friendly (2007)A framework for collaborative…VisTrails (2006)VisTrailsScientific workflow management and the Kepler system (2005)Scientific workflow managemen…Galaxy: A platform for interactive large-scale genome analysis (2005)Galaxy: A platform for intera…Workflow Patterns (2003)Workflow PatternsA classification of tasks in bioinformatics (2001)A classification of tasks in …Workflows Community Summit: Advancing the State-of-the-art of Scientific Workflows Management Systems Research and Development (2021)Workflows Community Summit: A…WfCommons: A framework for enabling scientific workflow research and development (2021)WfCommons: A framework for en…WfChef: Automated Generation of Accurate Scientific Workflow Generators (2021)WfChef: Automated Generation …A Community Roadmap for Scientific Workflows Research and Development (2021)A Community Roadmap for Scien…End-to-end online performance data capture and analysis for scientific workflows (2020)End-to-end online performance…A Five-Star Guide for Achieving Replicability and Reproducibility When Working with GIS Software and Algorithms (2020)A Five-Star Guide for Achievi…Adaptive Caching for Data-Intensive Scientific Workflows in the Cloud (2019)Adaptive Caching for Data-Int…Towards Automating Data Narratives (2017)Towards Automating Data Narra…Towards an ontology-based recommender system for relevant bioinformatics workflows (2016)Towards an ontology-based rec…Toward a digital resilience (2016)Toward a digital resilienceScientific workflows with the jABC framework (2016)Scientific workflows with the…Scientific Workflow Clustering and Recommendation Leveraging Layer Hierarchical Analysis (2016)Scientific Workflow Clusterin…Scientific workflows for process mining: building blocks, scenarios, and implementation (2015)Scientific workflows for proc…NeuroManager: a workflow analysis based simulation management engine for computational neuroscience (2015)NeuroManager: a workflow anal…LabelFlow: Exploiting Workflow Provenance to Surface Scientific Data Provenance (2015)LabelFlow: Exploiting Workflo…FragFlow Automated Fragment Detection in Scientific Workflows (2014)FragFlow Automated Fragment D…Workflow Management (2002)Provenance and scientific workflows (2008)FireWorks: a dynamic workflow system designed for high‐throughput applications (2015)Taverna: a tool for building and running workflows of services (2006)AiiDA: automated interactive infrastructure and database for computational science (2015)A review of bioinformatic pipeline frameworks (2016)BioContainers: an open-source and community-driven framework for software standardization (2017)Design Patterns: Elements of Reusable Object-Oriented Software (1994)Bioconductor: open software development for computational biology and bioinformatics (2004)Snakemake—a scalable bioinformatics workflow engine (2012)The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2016 update (2016)Nextflow enables reproducible computational workflows (2017)Taverna: lessons in creating a workflow environment for the life sciences (2005)Workflows For E-Science: Scientific Workflows For Grids (2007)myExperiment: a repository and social network for the sharing of bioinformatics workflows (2010)4 What Is Web 2.0? Design Patterns and Business Models for the Next Generation of Software (2012)Scientific workflows for computational reproducibility in the life sciences: Status, challenges and opportunities (2017)Taverna: a tool for the composition and enactment of bioinformatics workflows (2004)Geospatial Cyberinfrastructure: Past, present and future (2010)A characterization of workflow management systems for extreme-scale applications (2017)Reproducibility in Scientific Computing (2018)An overview of workflow management: From process modeling to workflow automation infrastructure (1995)THE APPLICATION OF PETRI NETS TO WORKFLOW MANAGEMENT (1998)Business Process Management: A Survey (2003)YAWL: yet another workflow language (2004)Similarity assessment and efficient retrieval of semantic workflows (2012)Quantifying Reproducibility in Computational Biology: The Case of the Tuberculosis Drugome (2013)Using a suite of ontologies for preserving workflow-centric research objects (2015)Using Galaxy to Perform Large‐Scale Interactive Data Analyses (2007)Integrating diverse databases into an unified analysis framework: a Galaxy approach (2011)Integrated Systems for NGS Data Management and Analysis: Open Issues and Available Solutions (2016)SPADE: Support for Provenance Auditing in Distributed Environments (2012)A survey on provenance: What for? What form? What from? (2017)The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2018 update (2018)The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2022 update (2022)
this work references cited by second hop

References

  • 2010Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences3,455 cited
  • 2003Workflow Patterns2,613 cited
  • 2005Galaxy: A platform for interactive large-scale genome analysis2,027 cited
  • 2005Scientific workflow management and the Kepler system1,681 cited
  • 2008Workflows and e-Science: An overview of workflow system features and capabilities832 cited
  • 2013The Taverna workflow suite: designing and executing workflows of Web Services on the desktop, web or in the cloud678 cited
  • 2006VisTrails480 cited
  • 2008The design and realisation of the Virtual Research Environment for social sharing of workflows432 cited
  • 2010Wings: Intelligent Workflow-Based Design of Computational Experiments201 cited
  • 2007A framework for collaborative analysis of ENCODE data: Making large-scale analyses biologist-friendly158 cited
  • 2001A classification of tasks in bioinformatics139 cited
  • 2008Querying and re-using workflows with VsTrails101 cited

Cited by

  • 2021WfCommons: A framework for enabling scientific workflow research and development68 cited
  • 2020A Five-Star Guide for Achieving Replicability and Reproducibility When Working with GIS Software and Algorithms54 cited

Only edges whose both ends are imported exist here. Widen the year window, or show the whole map. Back to the work

  • 2016Scientific Workflow Clustering and Recommendation Leveraging Layer Hierarchical Analysis53 cited
  • 2021A Community Roadmap for Scientific Workflows Research and Development49 cited
  • 2015Scientific workflows for process mining: building blocks, scenarios, and implementation44 cited
  • 2016Toward a digital resilience29 cited
  • 2017Towards Automating Data Narratives23 cited
  • 2020End-to-end online performance data capture and analysis for scientific workflows19 cited
  • 2014FragFlow Automated Fragment Detection in Scientific Workflows16 cited
  • 2019Adaptive Caching for Data-Intensive Scientific Workflows in the Cloud15 cited
  • 2021Workflows Community Summit: Advancing the State-of-the-art of Scientific Workflows Management Systems Research and Development15 cited
  • 2016Scientific workflows with the jABC framework13 cited
  • 2015NeuroManager: a workflow analysis based simulation management engine for computational neuroscience12 cited
  • 2021WfChef: Automated Generation of Accurate Scientific Workflow Generators11 cited
  • 2015LabelFlow: Exploiting Workflow Provenance to Surface Scientific Data Provenance11 cited
  • 2016Towards an ontology-based recommender system for relevant bioinformatics workflows8 cited