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Building an environment to facilitate discoveries for plant sciences

Andrew Lenards · Nirav C. Merchant · Dan Stanzione

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Scientific Computing and Data Management Distributed and Parallel Computing Systems Genetics, Bioinformatics, and Biomedical Research

Abstract

The iPlant Collaborative is an NSF-funded cyberinfrastructure (CI) effort directed towards the plant sciences community. This paper enumerates the key concepts, middleware, tools, and extensions that create the unique capabilities of the iPlant Discovery Environment (DE) that provide access to our CI. The DE is a rich web-based application that brings flexible CI capabilities to a wide audience affiliated with the plant sciences, from computational biologists, bioinformaticians, applications developers, to bench biologists.

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2010Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences 2010The missing graphical user interface for genomics

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2015Architecting a Distributed Bioinformatics Platform with iRODS and iPlant Agave API

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