In-situ I/O processing

Abstract

Increasingly severe I/O bottlenecks on High-End Computing machines are prompting scientists to process output data during simulation time, "in-situ", and before placing data on disks. This paper argues for flexibility in the implementation of such in-situ data analytics, using measurements and a performance model that demonstrate the potential advantages and limitations of performing analytics at different levels of the I/O hierarchy, including on a machine's compute nodes vs. on separate "staging" nodes dedicated to analysis tasks. Model and measurement results are guided by realistic large-scale applications running on leadership class machines, and I/O and analytics actions are described as computational dataflow graphs -- termed I/O graphs -- that combine data movement with 'in transit' operations on data as it is being moved across the I/O hierarchy. Results demonstrate the importance of flexibility in analytics placement and characterize the attributes of analytics operations that lead to different placement decisions.

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