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Detecting common scientific workflow fragments using templates and execution provenance
13 references·12 citing·34 second hop
Detecting common scientific workflow fragments using templates and execution provenance (2013)Detecting common scientific workflow frag…Similarity assessment and efficient retrieval of semantic workflows (2012)Similarity assessment and eff…CrowdLabs: Social Analysis and Visualization for the Sciences (2011)CrowdLabs: Social Analysis an…A new approach for publishing workflows (2011)A new approach for publishing…Wings: Intelligent Workflow-Based Design of Computational Experiments (2010)Wings: Intelligent Workflow-B…The Open Provenance Model core specification (v1.1) (2010)The Open Provenance Model cor…Towards Case-Based Support for e-Science Workflow Generation by Mining Provenance (2008)Towards Case-Based Support fo…The design and realisation of the Virtual Research Environment for social sharing of workflows (2008)The design and realisation of…Workflow discovery: the problem, a case study from e-Science and a graph-based solution (2006)Workflow discovery: the probl…VisTrails (2006)VisTrailsSeven Bottlenecks to Workflow Reuse and Repurposing (2005)Seven Bottlenecks to Workflow…Scientific workflow management and the Kepler system (2005)Scientific workflow managemen…Galaxy: A platform for interactive large-scale genome analysis (2005)Galaxy: A platform for intera…Workflow Patterns (2003)Workflow PatternsTopic-based crossing-workflow fragment discovery (2020)Topic-based crossing-workflow…trackr: A Framework for Enhancing Discoverability and Reproducibility of Data Visualizations and Other Artifacts in R (2019)trackr: A Framework for Enhan…Crossing Scientific Workflow Fragments Discovery Through Activity Abstraction in Smart Campus (2018)Crossing Scientific Workflow …A survey of simulation provenance systems: modeling, capturing, querying, visualization, and advanced utilization (2018)A survey of simulation proven…Scientific workflows in data analysis: Bridging expertise across multiple domains (2017)Scientific workflows in data …Keyword-Based Search of Workflow Fragments and Their Composition (2017)Keyword-Based Search of Workf…Abstract, link, publish, exploit: An end to end framework for workflow sharing (2017)Abstract, link, publish, expl…Mining Workflow Repositories for Improving Fragments Reuse (2015)Mining Workflow Repositories …Workflow Reuse in Practice: A Study of Neuroimaging Pipeline Users (2014)Workflow Reuse in Practice: A…Towards Workflow Ecosystems through Semantic and Standard Representations (2014)Towards Workflow Ecosystems t…FragFlow Automated Fragment Detection in Scientific Workflows (2014)FragFlow Automated Fragment D…Common motifs in scientific workflows: An empirical analysis (2012)Common motifs in scientific w…Kepler: An Extensible System for Design and Execution of Scientific Workflows (2004)Workflow mining: discovering process models from event logs (2004)Enabling ScientificWorkflow Reuse through Structured Composition of Dataflow and Control-Flow (2006)Data curation + process curation=data integration + science (2008)Workflow Management (2002)Provenance and scientific workflows (2008)FireWorks: a dynamic workflow system designed for high‐throughput applications (2015)Graph Matching Algorithms for Business Process Model Similarity Search (2009)Similarity search for scientific workflows (2014)A knowledge-intensive approach to process similarity calculation (2015)Scientific Workflow Clustering and Recommendation Leveraging Layer Hierarchical Analysis (2016)Examining the Challenges of Scientific Workflows (2007)Augmenting PROV with Plans in P-PLAN: Scientific Processes as Linked Data (2012)D-PROV: extending the PROV provenance model with workflow structure (2013)Recording provenance of workflow runs with RO-Crate (2024)Taverna: a tool for building and running workflows of services (2006)Quantifying Reproducibility in Computational Biology: The Case of the Tuberculosis Drugome (2013)Using a suite of ontologies for preserving workflow-centric research objects (2015)A survey of data provenance in e-science (2005)SPADE: Support for Provenance Auditing in Distributed Environments (2012)AiiDA: automated interactive infrastructure and database for computational science (2015)A survey on provenance: What for? What form? What from? (2017)Taverna: lessons in creating a workflow environment for the life sciences (2005)Workflows For E-Science: Scientific Workflows For Grids (2007)myExperiment: a repository and social network for the sharing of bioinformatics workflows (2010)4 What Is Web 2.0? Design Patterns and Business Models for the Next Generation of Software (2012)Scientific workflows for computational reproducibility in the life sciences: Status, challenges and opportunities (2017)An overview of workflow management: From process modeling to workflow automation infrastructure (1995)THE APPLICATION OF PETRI NETS TO WORKFLOW MANAGEMENT (1998)Business Process Management: A Survey (2003)YAWL: yet another workflow language (2004)The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2016 update (2016)The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2018 update (2018)The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2022 update (2022)
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References

  • 2003Workflow Patterns2,613 cited
  • 2005Galaxy: A platform for interactive large-scale genome analysis2,027 cited
  • 2005Scientific workflow management and the Kepler system1,681 cited
  • 2010The Open Provenance Model core specification (v1.1)706 cited
  • 2006VisTrails480 cited
  • 2008The design and realisation of the Virtual Research Environment for social sharing of workflows432 cited
  • 2010Wings: Intelligent Workflow-Based Design of Computational Experiments201 cited
  • 2012Similarity assessment and efficient retrieval of semantic workflows118 cited
  • 2005Seven Bottlenecks to Workflow Reuse and Repurposing82 cited
  • 2011A new approach for publishing workflows78 cited
  • 2006Workflow discovery: the problem, a case study from e-Science and a graph-based solution78 cited
  • 2008Towards Case-Based Support for e-Science Workflow Generation by Mining Provenance56 cited
  • 2011CrowdLabs: Social Analysis and Visualization for the Sciences54 cited

Cited by

  • 2017Abstract, link, publish, exploit: An end to end framework for workflow sharing29 cited
  • 2012Common motifs in scientific workflows: An empirical analysis

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25 cited
  • 2014FragFlow Automated Fragment Detection in Scientific Workflows16 cited
  • 2014Workflow Reuse in Practice: A Study of Neuroimaging Pipeline Users14 cited
  • 2018A survey of simulation provenance systems: modeling, capturing, querying, visualization, and advanced utilization13 cited
  • 2014Towards Workflow Ecosystems through Semantic and Standard Representations12 cited
  • 2018Crossing Scientific Workflow Fragments Discovery Through Activity Abstraction in Smart Campus11 cited
  • 2017Scientific workflows in data analysis: Bridging expertise across multiple domains10 cited
  • 2020Topic-based crossing-workflow fragment discovery8 cited
  • 2017Keyword-Based Search of Workflow Fragments and Their Composition7 cited
  • 2019trackr: A Framework for Enhancing Discoverability and Reproducibility of Data Visualizations and Other Artifacts in R6 cited
  • 2015Mining Workflow Repositories for Improving Fragments Reuse6 cited