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Architecture for interoperable software in biology
11 references·1 citing·29 second hop
Architecture for interoperable software in biology (2012)Architecture for interoperable software i…Plug-and-play macroscopes (2011)Plug-and-play macroscopesTowards a cyberinfrastructure for the biological sciences: progress, visions and challenges (2008)Towards a cyberinfrastructure…Performing statistical analyses on quantitative data in Taverna workflows: An example using R and maxdBrowse to identify differentially-expressed genes from microarray data (2008)Performing statistical analys…Taverna: a tool for building and running workflows of services (2006)Taverna: a tool for building …Galaxy: A platform for interactive large-scale genome analysis (2005)Galaxy: A platform for intera…Taverna: a tool for the composition and enactment of bioinformatics workflows (2004)Taverna: a tool for the compo…Bioconductor: open software development for computational biology and bioinformatics (2004)Bioconductor: open software d…Creating a bioinformatics nation (2002)Creating a bioinformatics nat…BioMOBY: An open source biological web services proposal (2002)BioMOBY: An open source biolo…THE ERATO SYSTEMS BIOLOGY WORKBENCH: ENABLING INTERACTION AND EXCHANGE BETWEEN SOFTWARE TOOLS FOR COMPUTATIONAL BIOLOGY (2001)THE ERATO SYSTEMS BIOLOGY WOR…Design Patterns: Elements of Reusable Object-Oriented Software (1994)Design Patterns: Elements of …Creating reproducible pharmacogenomic analysis pipelines (2019)Creating reproducible pharmac…A Pattern Language (1977)The Anatomy of a Design Theory (2007)Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences (2010)Socio-technical systems: From design methods to systems engineering (2010)Mapping knowledge domains (2004)The design and realisation of the Virtual Research Environment for social sharing of workflows (2008)Cloud-based bibliometric analysis service for systematic mapping studies (2015)Discovering the interdisciplinary nature of Big Data research through social network analysis and visualization (2017)An automated pipeline for the discovery of conspiracy and conspiracy theory narrative frameworks: Bridgegate, Pizzagate and storytelling on the web (2020)BioCatalogue: a universal catalogue of web services for the life sciences (2010)myExperiment: a repository and social network for the sharing of bioinformatics workflows (2010)BioMOBY Successfully Integrates Distributed Heterogeneous Bioinformatics Web Services. The PlaNet Exemplar Case (2005)Counting Species: Biopower and the Global Biodiversity Census (2008)Next-generation sequencing data interpretation: enhancing reproducibility and accessibility (2012)The MOLGENIS toolkit: rapid prototyping of biosoftware at the push of a button (2010)openBIS: a flexible framework for managing and analyzing complex data in biology research (2011)Scholarly Communication 2.0: Exploring Researchers' Opinions on Web 2.0 for Scientific Knowledge Creation, Evaluation and Dissemination (2011)Characterization of scientific workflows (2008)The iPlant Collaborative: Cyberinfrastructure for Plant Biology (2011)The Taverna workflow suite: designing and executing workflows of Web Services on the desktop, web or in the cloud (2013)Text Mining Infrastructure in R (2008)A Draft Sequence of the Neandertal Genome (2010)The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2016 update (2016)The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2018 update (2018)The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2022 update (2022)Workflows and e-Science: An overview of workflow system features and capabilities (2008)Ten Simple Rules for Reproducible Computational Research (2013)AnaBench: a Web/CORBA-based workbench for biomolecular sequence analysis (2003)Ins and Outs of Systems Biology vis-à-vis Molecular Biology: Continuation or Clear Cut? (2009)
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References

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  • 2004Bioconductor: open software development for computational biology and bioinformatics12,180 cited
  • 2005Galaxy: A platform for interactive large-scale genome analysis2,027 cited
  • 2004Taverna: a tool for the composition and enactment of bioinformatics workflows1,602 cited
  • 2006Taverna: a tool for building and running workflows of services944 cited
  • 2002BioMOBY: An open source biological web services proposal351 cited
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  • 2008Towards a cyberinfrastructure for the biological sciences: progress, visions and challenges165 cited
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  • 2001THE ERATO SYSTEMS BIOLOGY WORKBENCH: ENABLING INTERACTION AND EXCHANGE BETWEEN SOFTWARE TOOLS FOR COMPUTATIONAL BIOLOGY88 cited
  • 2008Performing statistical analyses on quantitative data in Taverna workflows: An example using R and maxdBrowse to identify differentially-expressed genes from microarray data54 cited

Cited by

  • 2019Creating reproducible pharmacogenomic analysis pipelines6 cited

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