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A framework for collaborative analysis of ENCODE data: Making large-scale analyses biologist-friendly
1 references·11 citing·27 second hop
A framework for collaborative analysis of ENCODE data: Making large-scale analyses biologist-friendly (2007)A framework for collaborative analysis of…Galaxy: A platform for interactive large-scale genome analysis (2005)Galaxy: A platform for intera…Integrated Systems for NGS Data Management and Analysis: Open Issues and Available Solutions (2016)Integrated Systems for NGS Da…REPRODUCIBLE RESEARCH WORKFLOW IN R FOR THE ANALYSIS OF PERSONALIZED HUMAN MICROBIOME DATA (2015)REPRODUCIBLE RESEARCH WORKFLO…Scaling Bio-Analyses from Computational Clusters to Grids. (2013)Scaling Bio-Analyses from Com…Common motifs in scientific workflows: An empirical analysis (2013)Common motifs in scientific w…Using Galaxy to Perform Large‐Scale Interactive Data Analyses (2012)Using Galaxy to Perform Large…Common motifs in scientific workflows: An empirical analysis (2012)Common motifs in scientific w…Towards a MOLGENIS Based Computational Framework (2011)Towards a MOLGENIS Based Comp…Integrating diverse databases into an unified analysis framework: a Galaxy approach (2011)Integrating diverse databases…Galaxy: A Gateway to Tools in e-Science (2011)Galaxy: A Gateway to Tools in…WebLab: a data-centric, knowledge-sharing bioinformatic platform (2009)WebLab: a data-centric, knowl…Using Galaxy to Perform Large‐Scale Interactive Data Analyses (2007)Using Galaxy to Perform Large…Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences (2010)Galaxy: A Web‐Based Genome Analysis Tool for Experimentalists (2010)Bringing numerous methods for expression and promoter analysis to a public cloud computing service (2017)GalaxyTrakr: a distributed analysis tool for public health whole genome sequence data accessible to non-bioinformaticians (2021)Workflow Patterns (2003)Scientific Workflow Clustering and Recommendation Leveraging Layer Hierarchical Analysis (2016)A Five-Star Guide for Achieving Replicability and Reproducibility When Working with GIS Software and Algorithms (2020)WfCommons: A framework for enabling scientific workflow research and development (2021)Taverna: a tool for the composition and enactment of bioinformatics workflows (2004)Taverna: a tool for building and running workflows of services (2006)The biology workbench—A seamless database and analysis environment for the biologist (1998)WorkWays : interacting with scientific workflows (2015)Shiny-phyloseq: Web application for interactive microbiome analysis with provenance tracking (2014)Bioconductor: open software development for computational biology and bioinformatics (2004)The Taverna workflow suite: designing and executing workflows of Web Services on the desktop, web or in the cloud (2013)Trecode: A FAIR Eco-System for the Analysis and Archiving of Omics Data in a Combined Diagnostic and Research Setting (2022)Enhancing and abstracting scientific workflow provenance for data publishing (2013)Scientific workflows with the jABC framework (2016)Crossing Scientific Workflow Fragments Discovery Through Activity Abstraction in Smart Campus (2018)Designing Integrated Computational Biology Pipelines Visually (2013)Bioportainer Workbench: a versatile and user-friendly system that integrates implementation, management, and use of bioinformatics resources in Docker environments (2019)The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2016 update (2016)The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2018 update (2018)The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2022 update (2022)High-Throughput Translational Medicine: Challenges and Solutions (2013)Big Data Smart Socket (BDSS): a system that abstracts data transfer habits from end users (2016)Guidelines for Reproducibly Building and Simulating Systems Biology Models (2016)
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References

  • 2005Galaxy: A platform for interactive large-scale genome analysis2,027 cited

Cited by

  • 2007Using Galaxy to Perform Large‐Scale Interactive Data Analyses143 cited
  • 2013Common motifs in scientific workflows: An empirical analysis88 cited
  • 2011Integrating diverse databases into an unified analysis framework: a Galaxy approach62 cited
  • 2016Integrated Systems for NGS Data Management and Analysis: Open Issues and Available Solutions55 cited
  • 2012Using Galaxy to Perform Large‐Scale Interactive Data Analyses48 cited
  • 2015REPRODUCIBLE RESEARCH WORKFLOW IN R FOR THE ANALYSIS OF PERSONALIZED HUMAN MICROBIOME DATA35 cited
  • 2009WebLab: a data-centric, knowledge-sharing bioinformatic platform29 cited
  • 2011Galaxy: A Gateway to Tools in e-Science26 cited
  • 2012Common motifs in scientific workflows: An empirical analysis25 cited
  • 2013Scaling Bio-Analyses from Computational Clusters to Grids.13 cited
  • 2011Towards a MOLGENIS Based Computational Framework9 cited

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