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Workflows for microarray data processing in the Kepler environment
10 references·1 citing·38 second hop
Workflows for microarray data processing in the Kepler environment (2012)Workflows for microarray data processing …Applications of the pipeline environment for visual informatics and genomics computations (2011)Applications of the pipeline …jORCA: easily integrating bioinformatics Web Services (2010)jORCA: easily integrating bio…Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences (2010)Galaxy: a comprehensive appro…Bioclipse 2: A scriptable integration platform for the life sciences (2009)Bioclipse 2: A scriptable int…Scientific workflow systems - can one size fit all? (2008)Scientific workflow systems -…Scientific workflow design for mere mortals (2008)Scientific workflow design fo…Performing statistical analyses on quantitative data in Taverna workflows: An example using R and maxdBrowse to identify differentially-expressed genes from microarray data (2008)Performing statistical analys…Scientific workflow management and the Kepler system (2005)Scientific workflow managemen…Taverna: a tool for the composition and enactment of bioinformatics workflows (2004)Taverna: a tool for the compo…Bioconductor: open software development for computational biology and bioinformatics (2004)Bioconductor: open software d…OPQL: Querying scientific workflow provenance at the graph level (2013)OPQL: Querying scientific wor…Workflow Management (2002)Workflow Patterns (2003)Provenance and scientific workflows (2008)FireWorks: a dynamic workflow system designed for high‐throughput applications (2015)A survey of data provenance in e-science (2005)Taverna: lessons in creating a workflow environment for the life sciences (2005)Scientific Process Automation and Workflow Management (2009)Scientific Workflows: Business as Usual? (2009)An algebraic approach for data-centric scientific workflows (2011)The Blue Obelisk—Interoperability in Chemical Informatics (2006)The design and realisation of the Virtual Research Environment for social sharing of workflows (2008)The Evolution of myExperiment (2010)From Personal Tool to Community Resource (2015)Bacting: a next generation, command line version of Bioclipse (2021)Taverna: a tool for building and running workflows of services (2006)A formal semantics for the Taverna 2 workflow model (2009)Analysing Scientific Workflows: Why Workflows Not Only Connect Web Services (2009)CaGrid Workflow Toolkit: A taverna based workflow tool for cancer grid (2010)Design Patterns: Elements of Reusable Object-Oriented Software (1994)Snakemake—a scalable bioinformatics workflow engine (2012)The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2016 update (2016)Nextflow enables reproducible computational workflows (2017)The myGrid ontology: bioinformatics service discovery (2007)Interoperability With Moby 1.0 - It's Better Than Sharing Your Toothbrush! (2008)The 2nd DBCLS BioHackathon: interoperable bioinformatics Web services for integrated applications (2011)MAPI: a software framework for distributed biomedical applications (2013)Scientific Workflows and XMDD (2014)YAWL: yet another workflow language (2004)Network Analysis of Scientific Workflows: A Gateway to Reuse (2010)Towards optimising distributed data streaming graphs using parallel streams (2010)The TimeStudio Project: An open source scientific workflow system for the behavioral and brain sciences (2015)The perfect neuroimaging-genetics-computation storm: collision of petabytes of data, millions of hardware devices and thousands of software tools (2013)Workflow Reuse in Practice: A Study of Neuroimaging Pipeline Users (2014)Improving data workflow systems with cloud services and use of open data for bioinformatics research (2017)Text Mining Infrastructure in R (2008)A Draft Sequence of the Neandertal Genome (2010)Workflows and e-Science: An overview of workflow system features and capabilities (2008)Ten Simple Rules for Reproducible Computational Research (2013)
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References

  • 2004Bioconductor: open software development for computational biology and bioinformatics12,180 cited
  • 2010Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences3,455 cited
  • 2005Scientific workflow management and the Kepler system1,681 cited
  • 2004Taverna: a tool for the composition and enactment of bioinformatics workflows1,602 cited
  • 2008Scientific workflow design for mere mortals168 cited
  • 2008Scientific workflow systems - can one size fit all?112 cited
  • 2009Bioclipse 2: A scriptable integration platform for the life sciences61 cited
  • 2008Performing statistical analyses on quantitative data in Taverna workflows: An example using R and maxdBrowse to identify differentially-expressed genes from microarray data54 cited
  • 2011Applications of the pipeline environment for visual informatics and genomics computations34 cited
  • 2010jORCA: easily integrating bioinformatics Web Services25 cited

Cited by

  • 2013OPQL: Querying scientific workflow provenance at the graph level11 cited

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