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Integrating diverse databases into an unified analysis framework: a Galaxy approach
4 references·3 citing·22 second hop
Integrating diverse databases into an unified analysis framework: a Galaxy approach (2011)Integrating diverse databases into an uni…Galaxy: A Web‐Based Genome Analysis Tool for Experimentalists (2010)Galaxy: A Web‐Based Genome An…Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences (2010)Galaxy: a comprehensive appro…Using Galaxy to Perform Large‐Scale Interactive Data Analyses (2007)Using Galaxy to Perform Large…A framework for collaborative analysis of ENCODE data: Making large-scale analyses biologist-friendly (2007)A framework for collaborative…Bioportainer Workbench: a versatile and user-friendly system that integrates implementation, management, and use of bioinformatics resources in Docker environments (2019)Bioportainer Workbench: a ver…Visual Life Sciences Workflow Design Using Distributed and Heterogeneous Resources (2018)Visual Life Sciences Workflow…Designing Integrated Computational Biology Pipelines Visually (2013)Designing Integrated Computat…Galaxy: A platform for interactive large-scale genome analysis (2005)Semantically-Guided Workflow Construction in Taverna: The SADI and BioMoby Plug-Ins (2010)Bringing numerous methods for expression and promoter analysis to a public cloud computing service (2017)GalaxyTrakr: a distributed analysis tool for public health whole genome sequence data accessible to non-bioinformaticians (2021)Taverna: a tool for the composition and enactment of bioinformatics workflows (2004)Scientific workflow management and the Kepler system (2005)Examining the Challenges of Scientific Workflows (2007)An automated real-time integration and interoperability framework for bioinformatics (2015)Design Patterns: Elements of Reusable Object-Oriented Software (1994)Bioconductor: open software development for computational biology and bioinformatics (2004)Snakemake—a scalable bioinformatics workflow engine (2012)The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2016 update (2016)Kepler: An Extensible System for Design and Execution of Scientific Workflows (2004)Taverna: a tool for building and running workflows of services (2006)Declarative workflows: Balancing between flexibility and support (2009)Nextflow enables reproducible computational workflows (2017)The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2018 update (2018)Launching genomics into the cloud: deployment of Mercury, a next generation sequence analysis pipeline (2014)Managing, Analysing, and Integrating Big Data in Medical Bioinformatics: Open Problems and Future Perspectives (2014)Towards reproducible computational drug discovery (2020)Common motifs in scientific workflows: An empirical analysis (2013)Integrated Systems for NGS Data Management and Analysis: Open Issues and Available Solutions (2016)
this work references cited by second hop

References

  • 2010Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences3,455 cited
  • 2010Galaxy: A Web‐Based Genome Analysis Tool for Experimentalists1,430 cited
  • 2007A framework for collaborative analysis of ENCODE data: Making large-scale analyses biologist-friendly158 cited
  • 2007Using Galaxy to Perform Large‐Scale Interactive Data Analyses143 cited

Cited by

  • 2019Bioportainer Workbench: a versatile and user-friendly system that integrates implementation, management, and use of bioinformatics resources in Docker environments10 cited
  • 2013Designing Integrated Computational Biology Pipelines Visually9 cited
  • 2018Visual Life Sciences Workflow Design Using Distributed and Heterogeneous Resources6 cited

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