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Biological Dynamics Markup Language (BDML): an open format for representing quantitative biological dynamics data
3 references·0 citing·11 second hop
Biological Dynamics Markup Language (BDML): an open format for representing quantitative biological dynamics data (2014)Biological Dynamics Markup Language (BDML…FieldML, a proposed open standard for the Physiome project for mathematical model representation (2013)FieldML, a proposed open stan…Reproducible computational biology experiments with SED-ML - The Simulation Experiment Description Markup Language (2011)Reproducible computational bi…XML, bioinformatics and data integration (2001)XML, bioinformatics and data …NetCDF: an interface for scientific data access (1990)The CellML Model Repository (2008)The Physiome Model Repository 2 (2011)Databases for multilevel biophysiology research available at Physiome.jp (2015)From FAIR to CURE: guidelines for computational models of biological systems (2026)Bioinformatics integration and agent technology (2004)Evolution of web services in bioinformatics (2005)Automation of in-silico data analysis processes through workflow management systems (2007)COMBINE archive and OMEX format: one file to share all information to reproduce a modeling project (2014)Proceedings of the 2017 Winter Simulation Conference (2017)Reproducibility in systems biology modelling (2021)
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References

  • 2011Reproducible computational biology experiments with SED-ML - The Simulation Experiment Description Markup Language257 cited
  • 2001XML, bioinformatics and data integration233 cited
  • 2013FieldML, a proposed open standard for the Physiome project for mathematical model representation36 cited

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