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CloVR: A virtual machine for automated and portable sequence analysis from the desktop using cloud computing
4 references·10 citing·33 second hop
CloVR: A virtual machine for automated and portable sequence analysis from the desktop using cloud computing (2011)CloVR: A virtual machine for automated an…Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences (2010)Galaxy: a comprehensive appro…Computational solutions to large-scale data management and analysis (2010)Computational solutions to la…Accessible Reproducible Research (2010)Accessible Reproducible Resea…Taverna: a tool for building and running workflows of services (2006)Taverna: a tool for building …Packaging and containerization of computational methods (2024)Packaging and containerizatio…Perspectives of using Cloud computing in integrative analysis of multi-omics data (2021)Perspectives of using Cloud c…The MG-RAST API explorer: an on-ramp for RESTful query composition (2019)The MG-RAST API explorer: an …YAMP: a containerized workflow enabling reproducibility in metagenomics research (2018)YAMP: a containerized workflo…Scalability and Validation of Big Data Bioinformatics Software (2017)Scalability and Validation of…Nephele: a cloud platform for simplified, standardized and reproducible microbiome data analysis (2017)Nephele: a cloud platform for…Biolmg.org: A Catalog of Virtual Machine Images for the Life Sciences (2015)Biolmg.org: A Catalog of Virt…Shiny-phyloseq: Web application for interactive microbiome analysis with provenance tracking (2014)Shiny-phyloseq: Web applicati…Parallelization in Scientific Workflow Management Systems (2013)Parallelization in Scientific…Harnessing virtual machines to simplify next-generation DNA sequencing analysis (2013)Harnessing virtual machines t…Taverna: a tool for the composition and enactment of bioinformatics workflows (2004)KNIME: The Konstanz Information Miner (2008)SAASFEE (2015)BeeFlow: A Workflow Management System for In Situ Processing across HPC and Cloud Systems (2018)WaveLab and Reproducible Research (1995)Statistical Analyses and Reproducible Research (2007)myExperiment: a repository and social network for the sharing of bioinformatics workflows (2010)Most computational hydrology is not reproducible, so is it really science? (2016)Reproducible Research in Computational Science (2011)The Biological Observation Matrix (BIOM) format or: how I learned to stop worrying and love the ome-ome (2012)REPRODUCIBLE RESEARCH WORKFLOW IN R FOR THE ANALYSIS OF PERSONALIZED HUMAN MICROBIOME DATA (2015)Establishing a framework for Open Geographic Information science (2016)Design Patterns: Elements of Reusable Object-Oriented Software (1994)Bioconductor: open software development for computational biology and bioinformatics (2004)Snakemake—a scalable bioinformatics workflow engine (2012)The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2016 update (2016)Next-generation sequencing data interpretation: enhancing reproducibility and accessibility (2012)Opportunities and Challenges Provided by Cloud Repositories for Bioinformatics‐Enabled Drug Discovery (2014)A vision for data science (2013)The big challenges of big data (2013)Reproducibility of computational workflows is automated using continuous analysis (2017)Improving bioinformatics software quality through incorporation of software engineering practices (2022)Bioinformatics software development: Principles and future directions (2024)1,500 scientists lift the lid on reproducibility (2016)Nextflow enables reproducible computational workflows (2017)Singularity: Scientific containers for mobility of compute (2017)Big Data and supply chain management: a review and bibliometric analysis (2016)Towards felicitous decision making: An overview on challenges and trends of Big Data (2016)Creating value from Social Big Data: Implications for Smart Tourism Destinations (2017)Characterization of scientific workflows (2008)The iPlant Collaborative: Cyberinfrastructure for Plant Biology (2011)The Taverna workflow suite: designing and executing workflows of Web Services on the desktop, web or in the cloud (2013)Developing a Reproducible Microbiome Data Analysis Pipeline Using the Amazon Web Services Cloud for a Cancer Research Group: Proof-of-Concept Study (2019)
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References

  • 2010Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences3,455 cited
  • 2006Taverna: a tool for building and running workflows of services944 cited
  • 2010Computational solutions to large-scale data management and analysis631 cited
  • 2010Accessible Reproducible Research308 cited

Cited by

  • 2017Nephele: a cloud platform for simplified, standardized and reproducible microbiome data analysis175 cited
  • 2014Shiny-phyloseq: Web application for interactive microbiome analysis with provenance tracking164 cited
  • 2017Scalability and Validation of Big Data Bioinformatics Software68 cited
  • 2013Parallelization in Scientific Workflow Management Systems28 cited
  • 2018YAMP: a containerized workflow enabling reproducibility in metagenomics research27 cited
  • 2013Harnessing virtual machines to simplify next-generation DNA sequencing analysis26 cited
  • 2024Packaging and containerization of computational methods24 cited
  • 2021Perspectives of using Cloud computing in integrative analysis of multi-omics data14 cited
  • 2019The MG-RAST API explorer: an on-ramp for RESTful query composition12 cited
  • 2015Biolmg.org: A Catalog of Virtual Machine Images for the Life Sciences

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9 cited