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BigDataScript: a scripting language for data pipelines
3 references·8 citing·22 second hop
BigDataScript: a scripting language for data pipelines (2014)BigDataScript: a scripting language for d…Snakemake—a scalable bioinformatics workflow engine (2012)Snakemake—a scalable bioinfor…Bpipe: a tool for running and managing bioinformatics pipelines (2012)Bpipe: a tool for running and…Ruffus: a lightweight Python library for computational pipelines (2010)Ruffus: a lightweight Python …An Empirical Investigation on the Challenges in Scientific Workflow Systems Development (2025)An Empirical Investigation on…uap: reproducible and robust HTS data analysis (2019)uap: reproducible and robust …Towards Reproducible Bioinformatics: The OpenBio-C Scientific Workflow Environment (2019)Towards Reproducible Bioinfor…Script of Scripts: A pragmatic workflow system for daily computational research (2019)Script of Scripts: A pragmati…Managing genomic variant calling workflows with Swift/T (2019)Managing genomic variant call…Improving data workflow systems with cloud services and use of open data for bioinformatics research (2017)Improving data workflow syste…BioQueue: a novel pipeline framework to accelerate bioinformatics analysis (2017)BioQueue: a novel pipeline fr…NextflowWorkbench: Reproducible and Reusable Workflows for Beginners and Experts (2016)NextflowWorkbench: Reproducib…Taverna: a tool for the composition and enactment of bioinformatics workflows (2004)Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences (2010)SUSHI: an exquisite recipe for fully documented, reproducible and reusable NGS data analysis (2016)Investigating reproducibility and tracking provenance – A genomic workflow case study (2017)Playing Super Mario 64 increases hippocampal grey matter in older adults (2017)Galaxy: A platform for interactive large-scale genome analysis (2005)Taverna: a tool for building and running workflows of services (2006)The impact of Docker containers on the performance of genomic pipelines (2015)An interactive workflow generator to support bioinformatics analysis through GPU acceleration (2017)Nextflow : un outil efficace pour l’amélioration de la stabilité numérique des calculs en analyse génomique (2017)A review of bioinformatic pipeline frameworks (2016)Scientific workflow management and the Kepler system (2005)The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2016 update (2016)Nextflow enables reproducible computational workflows (2017)1,500 scientists lift the lid on reproducibility (2016)The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2018 update (2018)A manifesto for reproducible science (2017)Interrater reliability: the kappa statistic (2012)Bioconda: sustainable and comprehensive software distribution for the life sciences (2018)Sustainable data analysis with Snakemake (2021)β-catenin mediates stress resilience through Dicer1/microRNA regulation (2014)Ten Simple Rules for Developing Usable Software in Computational Biology (2017)
this work references cited by second hop

References

  • 2012Snakemake—a scalable bioinformatics workflow engine2,775 cited
  • 2012Bpipe: a tool for running and managing bioinformatics pipelines159 cited
  • 2010Ruffus: a lightweight Python library for computational pipelines135 cited

Cited by

  • 2017Improving data workflow systems with cloud services and use of open data for bioinformatics research23 cited
  • 2019uap: reproducible and robust HTS data analysis23 cited
  • 2017BioQueue: a novel pipeline framework to accelerate bioinformatics analysis16 cited
  • 2016NextflowWorkbench: Reproducible and Reusable Workflows for Beginners and Experts16 cited
  • 2019Script of Scripts: A pragmatic workflow system for daily computational research15 cited
  • 2019Towards Reproducible Bioinformatics: The OpenBio-C Scientific Workflow Environment11 cited
  • 2025An Empirical Investigation on the Challenges in Scientific Workflow Systems Development8 cited
  • 2019Managing genomic variant calling workflows with Swift/T8 cited

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