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Harnessing virtual machines to simplify next-generation DNA sequencing analysis
3 references·2 citing·21 second hop
Harnessing virtual machines to simplify next-generation DNA sequencing analysis (2013)Harnessing virtual machines to simplify n…Next-generation sequencing data interpretation: enhancing reproducibility and accessibility (2012)Next-generation sequencing da…CloVR: A virtual machine for automated and portable sequence analysis from the desktop using cloud computing (2011)CloVR: A virtual machine for …Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences (2010)Galaxy: a comprehensive appro…Biolmg.org: A Catalog of Virtual Machine Images for the Life Sciences (2015)Biolmg.org: A Catalog of Virt…Opportunities and Challenges Provided by Cloud Repositories for Bioinformatics‐Enabled Drug Discovery (2014)Opportunities and Challenges …Privacy in the Age of Big Data: A Time for Big Decisions (2012)Identifying Participants in the Personal Genome Project by Name (2013)The big challenges of big data (2013)Creating a bioinformatics nation (2002)Mobyle: a new full web bioinformatics framework (2009)Dissemination of scientific software with Galaxy ToolShed (2014)Nonindependence and sensitivity analyses in ecological and evolutionary meta‐analyses (2017)Scientific workflows for computational reproducibility in the life sciences: Status, challenges and opportunities (2017)myExperiment: a repository and social network for the sharing of bioinformatics workflows (2010)Analysis Tool Web Services from the EMBL-EBI (2013)Sharing and performance optimization of reproducible workflows in the cloud (2019)Taverna: a tool for building and running workflows of services (2006)Computational solutions to large-scale data management and analysis (2010)Shiny-phyloseq: Web application for interactive microbiome analysis with provenance tracking (2014)Nephele: a cloud platform for simplified, standardized and reproducible microbiome data analysis (2017)Scalability and Validation of Big Data Bioinformatics Software (2017)Design Patterns: Elements of Reusable Object-Oriented Software (1994)Bioconductor: open software development for computational biology and bioinformatics (2004)Snakemake—a scalable bioinformatics workflow engine (2012)The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2016 update (2016)Nextflow enables reproducible computational workflows (2017)
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References

  • 2010Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences3,455 cited
  • 2012Next-generation sequencing data interpretation: enhancing reproducibility and accessibility318 cited
  • 2011CloVR: A virtual machine for automated and portable sequence analysis from the desktop using cloud computing282 cited

Cited by

  • 2014Opportunities and Challenges Provided by Cloud Repositories for Bioinformatics‐Enabled Drug Discovery13 cited
  • 2015Biolmg.org: A Catalog of Virtual Machine Images for the Life Sciences9 cited

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