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Jflow: a workflow management system for web applications
6 references·0 citing·21 second hop
Jflow: a workflow management system for web applications (2015)Jflow: a workflow management system for w…COSMOS: Python library for massively parallel workflows (2014)COSMOS: Python library for ma…Snakemake—a scalable bioinformatics workflow engine (2012)Snakemake—a scalable bioinfor…Ruffus: a lightweight Python library for computational pipelines (2010)Ruffus: a lightweight Python …Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences (2010)Galaxy: a comprehensive appro…Ergatis: a web interface and scalable software system for bioinformatics workflows (2010)Ergatis: a web interface and …Mobyle: a new full web bioinformatics framework (2009)Mobyle: a new full web bioinf…Taverna: a tool for the composition and enactment of bioinformatics workflows (2004)Bpipe: a tool for running and managing bioinformatics pipelines (2012)Nextflow enables reproducible computational workflows (2017)Bioconda: sustainable and comprehensive software distribution for the life sciences (2018)Sustainable data analysis with Snakemake (2021)Design Patterns: Elements of Reusable Object-Oriented Software (1994)Bioconductor: open software development for computational biology and bioinformatics (2004)The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2016 update (2016)BioMOBY: An open source biological web services proposal (2002)Galaxy: A platform for interactive large-scale genome analysis (2005)CloVR: A virtual machine for automated and portable sequence analysis from the desktop using cloud computing (2011)Armadillo 1.1: An Original Workflow Platform for Designing and Conducting Phylogenetic Analysis and Simulations (2012)Big data in biology: The hope and present-day challenges in it (2020)Kepler: An Extensible System for Design and Execution of Scientific Workflows (2004)Next-generation sequencing data interpretation: enhancing reproducibility and accessibility (2012)Genomics Virtual Laboratory: A Practical Bioinformatics Workbench for the Cloud (2015)The Taverna workflow suite: designing and executing workflows of Web Services on the desktop, web or in the cloud (2013)Omics Informatics: From Scattered Individual Software Tools to Integrated Workflow Management Systems (2016)Bioinformatics Workflow Management With The Wobidisco Ecosystem (2017)uap: reproducible and robust HTS data analysis (2019)A review of bioinformatic pipeline frameworks (2016)
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References

  • 2010Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences3,455 cited
  • 2012Snakemake—a scalable bioinformatics workflow engine2,775 cited
  • 2009Mobyle: a new full web bioinformatics framework310 cited
  • 2010Ruffus: a lightweight Python library for computational pipelines135 cited
  • 2010Ergatis: a web interface and scalable software system for bioinformatics workflows91 cited
  • 2014COSMOS: Python library for massively parallel workflows23 cited

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