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MOLNs: A Cloud Platform for Interactive, Reproducible, and Scalable Spatial Stochastic Computational Experiments in Systems Biology Using PyURDME
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MOLNs: A Cloud Platform for Interactive, Reproducible, and Scalable Spatial Stochastic Computational Experiments in Systems Biology Using PyURDME (2016)MOLNs: A Cloud Platform for Interactive, …Interactive notebooks: Sharing the code (2014)Interactive notebooks: Sharin…COMBINE archive and OMEX format: one file to share all information to reproduce a modeling project (2014)COMBINE archive and OMEX form…Galaxy: A platform for interactive large-scale genome analysis (2005)Galaxy: A platform for intera…Towards reproducible computational drug discovery (2020)Towards reproducible computat…Architectural Design Space for Modelling and Simulation as a Service: A Review (2020)Architectural Design Space fo…Multilevel Monte Carlo methods for computing failure probability of porous media flow systems (2016)Multilevel Monte Carlo method…A standard protocol for describing individual-based and agent-based models (2006)Accessible Reproducible Research (2010)Ten Simple Rules for Reproducible Computational Research (2013)Promoting Coordinated Development of Community-Based Information Standards for Modeling in Biology: The COMBINE Initiative (2015)Proceedings of the 2017 Winter Simulation Conference (2017)BioModels—15 years of sharing computational models in life science (2019)The biology workbench—A seamless database and analysis environment for the biologist (1998)ISYS: a decentralized, component-based approach to the integration of heterogeneous bioinformatics resources (2001)The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2016 update (2016)The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2018 update (2018)The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2022 update (2022)Multilevel Monte Carlo Path Simulation (2008)Multi-level Monte Carlo Finite Element method for elliptic PDEs with stochastic coefficients (2011)Multilevel Monte Carlo methods and applications to elliptic PDEs with random coefficients (2011)Multifidelity Cross-Entropy Estimation of Conditional Value-at-Risk for Risk-Averse Design Optimization (2020)Quantify uncertainty by estimating the probability density function of the output of interest using MLMC based Bayes method (2022)Bioconductor: open software development for computational biology and bioinformatics (2004)1,500 scientists lift the lid on reproducibility (2016)Nextflow enables reproducible computational workflows (2017)Reproducibility in systems biology modelling (2021)A meta-epidemiological assessment of transparency indicators of infectious disease models (2022)Building bioinformatics web applications with Streamlit (2023)The Discovery of Grounded Theory; Strategies for Qualitative Research (1968)Introduction to modeling and simulation (1997)Google Scholar to overshadow them all? Comparing the sizes of 12 academic search engines and bibliographic databases (2018)SimpleITK Image-Analysis Notebooks: a Collaborative Environment for Education and Reproducible Research (2017)Transparency, Reproducibility, and the Credibility of Economics Research (2018)Exploratory Research (2020)
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References

  • 2005Galaxy: A platform for interactive large-scale genome analysis2,027 cited
  • 2014Interactive notebooks: Sharing the code227 cited
  • 2014COMBINE archive and OMEX format: one file to share all information to reproduce a modeling project171 cited

Cited by

  • 2020Towards reproducible computational drug discovery208 cited
  • 2020Architectural Design Space for Modelling and Simulation as a Service: A Review24 cited
  • 2016Multilevel Monte Carlo methods for computing failure probability of porous media flow systems9 cited

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