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Recommendations on e-infrastructures for next-generation sequencing
4 references·1 citing·19 second hop
Recommendations on e-infrastructures for next-generation sequencing (2016)Recommendations on e-infrastructures for …Experiences with workflows for automating data-intensive bioinformatics (2015)Experiences with workflows fo…Lessons learned from implementing a national infrastructure in Sweden for storage and analysis of next-generation sequencing data (2013)Lessons learned from implemen…Automation of in-silico data analysis processes through workflow management systems (2007)Automation of in-silico data …Galaxy: A platform for interactive large-scale genome analysis (2005)Galaxy: A platform for intera…Tracking the NGS revolution: managing life science research on shared high-performance computing clusters (2018)Tracking the NGS revolution: …Taverna: a tool for the composition and enactment of bioinformatics workflows (2004)Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences (2010)ELIXIR-IT HPC@CINECA: high performance computing resources for the bioinformatics community (2020)0s and 1s in marine molecular research: a regional HPC perspective (2021)Kepler: An Extensible System for Design and Execution of Scientific Workflows (2004)Taverna: a tool for building and running workflows of services (2006)The impact of workflow tools on data-centric research (2009)Conveyor: a workflow engine for bioinformatic analyses (2011)Armadillo 1.1: An Original Workflow Platform for Designing and Conducting Phylogenetic Analysis and Simulations (2012)Snakemake—a scalable bioinformatics workflow engine (2012)Jug: Software for Parallel Reproducible Computation in Python (2017)SciPipe: A workflow library for agile development of complex and dynamic bioinformatics pipelines (2019)Developing and reusing bioinformatics data analysis pipelines using scientific workflow systems (2023)Computational Science Demands a New Paradigm (2005)Singularity: Scientific containers for mobility of compute (2017)Bioconda: sustainable and comprehensive software distribution for the life sciences (2018)The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2016 update (2016)The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2018 update (2018)The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2022 update (2022)
this work references cited by second hop

References

  • 2005Galaxy: A platform for interactive large-scale genome analysis2,027 cited
  • 2013Lessons learned from implementing a national infrastructure in Sweden for storage and analysis of next-generation sequencing data75 cited
  • 2015Experiences with workflows for automating data-intensive bioinformatics64 cited
  • 2007Automation of in-silico data analysis processes through workflow management systems63 cited

Cited by

  • 2018Tracking the NGS revolution: managing life science research on shared high-performance computing clusters15 cited

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