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Converting scripts into reproducible workflow research objects
8 references·3 citing·44 second hop
Converting scripts into reproducible workflow research objects (2016)Converting scripts into reproducible work…YesWorkflow: A User-Oriented, Language-Independent Tool for Recovering Workflow Information from Scripts (2015)YesWorkflow: A User-Oriented,…Using a suite of ontologies for preserving workflow-centric research objects (2015)Using a suite of ontologies f…Retrospective provenance without a runtime provenance recorder (2015)Retrospective provenance with…noWorkflow: Capturing and Analyzing Provenance of Scripts (2015)noWorkflow: Capturing and Ana…The Taverna workflow suite: designing and executing workflows of Web Services on the desktop, web or in the cloud (2013)The Taverna workflow suite: d…Provenance and data differencing for workflow reproducibility analysis (2013)Provenance and data differenc…Workflow-centric research objects: First class citizens in scholarly discourse. (2012)Workflow-centric research obj…StarFlow: A Script-Centric Data Analysis Environment (2010)StarFlow: A Script-Centric Da…A collaborative semantic-based provenance management platform for reproducibility (2022)A collaborative semantic-base…Implementing Computational Reproducibility in the Whole Tale Environment (2019)Implementing Computational Re…Combining P-Plan and the REPRODUCE-ME Ontology to Achieve Semantic Enrichment of Scientific Experiments Using Interactive Notebooks (2018)Combining P-Plan and the REPR…Scientific workflow management and the Kepler system (2005)Implementing Reproducible Research (2014)A Brief Tour Through Provenance in Scientific Workflows and Databases (2016)Yin & Yang: Demonstrating Complementary Provenance from noWorkflow & YesWorkflow (2016)Provenance Inference Techniques: Taxonomy, comparative analysis and design challenges (2018)Taverna: a tool for the composition and enactment of bioinformatics workflows (2004)KNIME - the Konstanz information miner (2009)The Open Provenance Model core specification (v1.1) (2010)Fine-Grained Provenance Collection over Scripts Through Program Slicing (2016)Tracking and Analyzing the Evolution of Provenance from Scripts (2016)The role of metadata in reproducible computational research (2021)Taverna: lessons in creating a workflow environment for the life sciences (2005)Workflows and e-Science: An overview of workflow system features and capabilities (2008)Why workflows break — Understanding and combating decay in Taverna workflows (2012)Investigating reproducibility and tracking provenance – A genomic workflow case study (2017)Sharing interoperable workflow provenance: A review of best practices and their practical application in CWLProv (2019)Bioconductor: open software development for computational biology and bioinformatics (2004)Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences (2010)noWorkflow (2017)Vamsa: Automated Provenance Tracking in Data Science Scripts (2020)Outlining Traceability: A Principle for Operationalizing Accountability in Computing Systems (2021)Taverna: a tool for building and running workflows of services (2006)AiiDA: automated interactive infrastructure and database for computational science (2015)A review of bioinformatic pipeline frameworks (2016)BioContainers: an open-source and community-driven framework for software standardization (2017)Reproducible Research in Computational Science (2011)Four level provenance support to achieve portable reproducibility of scientific workflows (2015)A framework for scientific workflow reproducibility in the cloud (2016)Provenance Analytics for Workflow-Based Computational Experiments (2018)An introduction to Docker for reproducible research (2015)Scientific Workflows (2016)Scientific workflows: Past, present and future (2017)Provenance for Computational Tasks: A Survey (2008)ReproZip (2016)Sustainable computational science: the ReScience initiative (2017)Augmenting PROV with Plans in P-PLAN: Scientific Processes as Linked Data (2012)8th USENIX Workshop on the Theory and Practice of Provenance (TaPP '16) (2016)Towards FAIR protocols and workflows: the OpenPREDICT use case (2020)ReproduceMeGit: A Visualization Tool for Analyzing Reproducibility of Jupyter Notebooks (2021)WaveLab and Reproducible Research (1995)Ten Simple Rules for Reproducible Computational Research (2013)The Rockerverse: Packages and Applications for Containerisation with R (2020)Toward Enabling Reproducibility for Data-Intensive Research Using the Whole Tale Platform (2020)Reproducible research policies and software/data management in scientific computing journals: a survey, discussion, and perspectives (2025)
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References

  • 2013The Taverna workflow suite: designing and executing workflows of Web Services on the desktop, web or in the cloud678 cited
  • 2015Using a suite of ontologies for preserving workflow-centric research objects131 cited
  • 2015noWorkflow: Capturing and Analyzing Provenance of Scripts129 cited
  • 2015YesWorkflow: A User-Oriented, Language-Independent Tool for Recovering Workflow Information from Scripts103 cited
  • 2012Workflow-centric research objects: First class citizens in scholarly discourse.85 cited
  • 2013Provenance and data differencing for workflow reproducibility analysis47 cited
  • 2015Retrospective provenance without a runtime provenance recorder28 cited
  • 2010StarFlow: A Script-Centric Data Analysis Environment26 cited

Cited by

  • 2018Combining P-Plan and the REPRODUCE-ME Ontology to Achieve Semantic Enrichment of Scientific Experiments Using Interactive Notebooks19 cited
  • 2019Implementing Computational Reproducibility in the Whole Tale Environment15 cited
  • 2022A collaborative semantic-based provenance management platform for reproducibility11 cited

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