Preprintgreen2017

Automatic OpenAPI to Bio.tools Conversion

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Scientific Computing and Data Management Research Data Management Practices Service-Oriented Architecture and Web Services

Abstract

Abstract Computation has become a central component of life sciences research. Making computational services FAIR has had a strong interest from the life sciences community in the past 15 years. Admittedly, uptake of any of the developed solutions has been limited, and the existence of multiple approaches will not have helped. Interoperability of solution may be essential. This work introduces an interoperability layer between two approaches for FAIR annotation of web services: OpenAPI and bio. tools.

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References

2010BioCatalogue: a universal catalogue of web services for the life sciences 2015Tools and data services registry: a community effort to document bioinformatics resources 2017Open chemistry: RESTful web APIs, JSON, NWChem and the modern web application 2006EMBRACE: Bioinformatics Data and Analysis Tool Services for e-Science

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