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TOGGLe, a flexible framework for easily building complex workflows and performing robust large-scale NGS analyses
7 references·0 citing·20 second hop
TOGGLe, a flexible framework for easily building complex workflows and performing robust large-scale NGS analyses (2018)TOGGLe, a flexible framework for easily b…The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2016 update (2016)The Galaxy platform for acces…A review of bioinformatic pipeline frameworks (2016)A review of bioinformatic pip…Snakemake—a scalable bioinformatics workflow engine (2012)Snakemake—a scalable bioinfor…Bpipe: a tool for running and managing bioinformatics pipelines (2012)Bpipe: a tool for running and…Ruffus: a lightweight Python library for computational pipelines (2010)Ruffus: a lightweight Python …Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences (2010)Galaxy: a comprehensive appro…Taverna: a tool for the composition and enactment of bioinformatics workflows (2004)Taverna: a tool for the compo…Design Patterns: Elements of Reusable Object-Oriented Software (1994)Bioconductor: open software development for computational biology and bioinformatics (2004)The Taverna workflow suite: designing and executing workflows of Web Services on the desktop, web or in the cloud (2013)Scientific workflows for computational reproducibility in the life sciences: Status, challenges and opportunities (2017)snakePipes: facilitating flexible, scalable and integrative epigenomic analysis (2019)Reproducible, scalable, and shareable analysis pipelines with bioinformatics workflow managers (2021)Galaxy: A platform for interactive large-scale genome analysis (2005)What does research reproducibility mean? (2016)The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2018 update (2018)SUSHI: an exquisite recipe for fully documented, reproducible and reusable NGS data analysis (2016)Investigating reproducibility and tracking provenance – A genomic workflow case study (2017)Playing Super Mario 64 increases hippocampal grey matter in older adults (2017)Nextflow enables reproducible computational workflows (2017)Bioconda: sustainable and comprehensive software distribution for the life sciences (2018)Sustainable data analysis with Snakemake (2021)β-catenin mediates stress resilience through Dicer1/microRNA regulation (2014)Ten Simple Rules for Developing Usable Software in Computational Biology (2017)Taverna: a tool for building and running workflows of services (2006)Workflows and e-Science: An overview of workflow system features and capabilities (2008)Ten Simple Rules for Reproducible Computational Research (2013)
this work references cited by second hop

References

  • 2010Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences3,455 cited
  • 2012Snakemake—a scalable bioinformatics workflow engine2,775 cited
  • 2016The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2016 update2,149 cited
  • 2004Taverna: a tool for the composition and enactment of bioinformatics workflows1,602 cited
  • 2016A review of bioinformatic pipeline frameworks250 cited
  • 2012Bpipe: a tool for running and managing bioinformatics pipelines159 cited
  • 2010Ruffus: a lightweight Python library for computational pipelines135 cited

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