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Container-Based Clinical Solutions for Portable and Reproducible Image Analysis
5 references·2 citing·23 second hop
Container-Based Clinical Solutions for Portable and Reproducible Image Analysis (2018)Container-Based Clinical Solutions for Po…Reproducibility vs. Replicability: A Brief History of a Confused Terminology (2018)Reproducibility vs. Replicabi…Singularity: Scientific containers for mobility of compute (2017)Singularity: Scientific conta…The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2016 update (2016)The Galaxy platform for acces…The impact of Docker containers on the performance of genomic pipelines (2015)The impact of Docker containe…A Virtual Imaging Platform for Multi-Modality Medical Image Simulation (2012)A Virtual Imaging Platform fo…HiOmics: A cloud-based one-stop platform for the comprehensive analysis of large-scale omics data (2024)HiOmics: A cloud-based one-st…A Serverless Tool for Platform Agnostic Computational Experiment Management (2019)A Serverless Tool for Platfor…An introduction to Docker for reproducible research (2015)Bioboxes: standardised containers for interchangeable bioinformatics software (2015)Containers for computational reproducibility (2023)The five pillars of computational reproducibility: bioinformatics and beyond (2023)The LONI Pipeline Processing Environment (2003)The Open Provenance Model: An Overview (2008)A survey of simulation provenance systems: modeling, capturing, querying, visualization, and advanced utilization (2018)Boutiques: a flexible framework to integrate command-line applications in computing platforms (2018)Galaxy: A platform for interactive large-scale genome analysis (2005)Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences (2010)Bioconda: sustainable and comprehensive software distribution for the life sciences (2018)The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2018 update (2018)Reproducible Research in Computational Science (2011)Journal of Computational Neuroscience (2013)What does research reproducibility mean? (2016)Open science, reproducibility, and transparency in ecology (2018)Reproducibility in machine learning for health research: Still a ways to go (2021)Estimating the reproducibility of psychological science (2015)1,500 scientists lift the lid on reproducibility (2016)Comparing perturbation models for evaluating stability of neuroimaging pipelines (2020)Galaxy: A Web‐Based Genome Analysis Tool for Experimentalists (2010)The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2020 update (2020)Sustainable data analysis with Snakemake (2021)
this work references cited by second hop

References

  • 2017Singularity: Scientific containers for mobility of compute2,734 cited
  • 2016The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2016 update2,149 cited
  • 2018Reproducibility vs. Replicability: A Brief History of a Confused Terminology426 cited
  • 2015The impact of Docker containers on the performance of genomic pipelines133 cited
  • 2012A Virtual Imaging Platform for Multi-Modality Medical Image Simulation112 cited

Cited by

  • 2019A Serverless Tool for Platform Agnostic Computational Experiment Management37 cited
  • 2024HiOmics: A cloud-based one-stop platform for the comprehensive analysis of large-scale omics data15 cited

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