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Identifying and Overcoming Threats to Reproducibility, Replicability, Robustness, and Generalizability in Microbiome Research
13 references·9 citing·38 second hop
Identifying and Overcoming Threats to Reproducibility, Replicability, Robustness, and Generalizability in Microbiome Research (2018)Identifying and Overcoming Threats to Rep…The preregistration revolution (2018)The preregistration revolutionRobust research needs many lines of evidence (2018)Robust research needs many li…Good enough practices in scientific computing. (2017)Good enough practices in scie…What does research reproducibility mean? (2016)What does research reproducib…Jupyter Notebooks – a publishing format for reproducible computational workflows (2016)Jupyter Notebooks – a publish…The unseen world: reflections on Leeuwenhoek (1677) ‘Concerning little animals’ (2015)The unseen world: reflections…The Extent and Consequences of P-Hacking in Science (2015)The Extent and Consequences o…The Statistical Crisis in Science (2014)The Statistical Crisis in Sci…Policy: NIH plans to enhance reproducibility (2014)Policy: NIH plans to enhance …An open investigation of the reproducibility of cancer biology research (2014)An open investigation of the …Ten Simple Rules for Reproducible Computational Research (2013)Ten Simple Rules for Reproduc…Why Most Published Research Findings Are False (2005)Why Most Published Research F…Why Most Published Research Findings Are False (2005)Why Most Published Research F…Generalizability of choice architecture interventions (2025)Generalizability of choice ar…Generalizability of Choice Architecture Interventions (2024)Generalizability of Choice Ar…Reproducibility in Computational Linguistics: Is Source Code Enough? (2022)Reproducibility in Computatio…Quantified Reproducibility Assessment of NLP Results (2022)Quantified Reproducibility As…A Metrological Perspective on Reproducibility in NLP* (2022)A Metrological Perspective on…A Checklist for Reproducible Computational Analysis in Clinical Metabolomics Research (2022)A Checklist for Reproducible …Improving energy research practices: guidance for transparency, reproducibility and quality (2021)Improving energy research pra…A Systematic Review of Reproducibility Research in Natural Language Processing (2021)A Systematic Review of Reprod…A community-led initiative for training in reproducible research (2021)A community-led initiative fo…Taverna: a tool for the composition and enactment of bioinformatics workflows (2004)Galaxy: A platform for interactive large-scale genome analysis (2005)Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences (2010)Reproducibility in Science (2014)Preferred reporting items for systematic reviews and meta‐analyses in ecology and evolutionary biology: a PRISMA extension (2021)Improving the quality of reports of meta-analyses of randomised controlled trials: the QUOROM statement (1999)Meta-analysis of Observational Studies in Epidemiology A Proposal for Reporting (2000)The CONSORT statement: revised recommendations for improving the quality of reports of parallel-group randomised trials (2001)Power failure: why small sample size undermines the reliability of neuroscience (2013)Estimating the reproducibility of psychological science (2015)The file drawer problem and tolerance for null results. (1979)False-Positive Psychology (2011)Methods for the detection of carelessly invalid responses in survey data (2015)The contact hypothesis re-evaluated (2018)The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2016 update (2016)A solution to minimum sample size for regressions (2020)CONSORT 2025 statement: updated guideline for reporting randomised trials (2025)CONSORT 2025 statement: updated guideline for reporting randomised trials (2025)Judgment under Uncertainty: Heuristics and Biases (1975)The case for motivated reasoning. (1990)Thinking, Fast and Slow (2011)Evaluating the replicability of social science experiments in Nature and Science between 2010 and 2015 (2018)Many Labs 2: Investigating Variation in Replicability Across Samples and Settings (2018)Replicability, Robustness, and Reproducibility in Psychological Science (2021)Inference to the Best Explanation, 2nd edition (2004)A manifesto for reproducible science (2017)Development of an online tool for linking behavior change techniques and mechanisms of action based on triangulation of findings from literature synthesis and expert consensus (2020)The Theory Crisis in Psychology: How to Move Forward (2021)Childhood Maltreatment and Mental Health Problems: A Systematic Review and Meta-Analysis of Quasi-Experimental Studies (2023)STARD 2015: An Updated List of Essential Items for Reporting Diagnostic Accuracy Studies (2015)STARD 2015: an updated list of essential items for reporting diagnostic accuracy studies (2015)oTree - An Open-Source Platform for Laboratory, Online, and Field Experiments (2016)Scientists rise up against statistical significance (2019)The New Statistics (2013)The ethics of algorithms: Mapping the debate (2016)Open science challenges, benefits and tips in early career and beyond (2019)The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2020 update (2020)NeuroKit2: A Python toolbox for neurophysiological signal processing (2021)
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References

  • 2005Why Most Published Research Findings Are False10,471 cited
  • 2005Why Most Published Research Findings Are False4,702 cited
  • 2016Jupyter Notebooks – a publishing format for reproducible computational workflows3,069 cited
  • 2018The preregistration revolution1,972 cited
  • 2015The Extent and Consequences of P-Hacking in Science1,389 cited
  • 2016What does research reproducibility mean?1,291 cited
  • 2014Policy: NIH plans to enhance reproducibility1,247 cited
  • 2014The Statistical Crisis in Science959 cited
  • 2013Ten Simple Rules for Reproducible Computational Research875 cited
  • 2018Robust research needs many lines of evidence664 cited
  • 2017Good enough practices in scientific computing.452 cited
  • 2015The unseen world: reflections on Leeuwenhoek (1677) ‘Concerning little animals’313 cited
  • 2014An open investigation of the reproducibility of cancer biology research311 cited

Cited by

  • 2021A Systematic Review of Reproducibility Research in Natural Language Processing83 cited
  • 2021Improving energy research practices: guidance for transparency, reproducibility and quality28 cited

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  • 2021A community-led initiative for training in reproducible research26 cited
  • 2022Quantified Reproducibility Assessment of NLP Results24 cited
  • 2022A Checklist for Reproducible Computational Analysis in Clinical Metabolomics Research23 cited
  • 2022Reproducibility in Computational Linguistics: Is Source Code Enough?11 cited
  • 2022A Metrological Perspective on Reproducibility in NLP*10 cited
  • 2025Generalizability of choice architecture interventions7 cited
  • 2024Generalizability of Choice Architecture Interventions2 cited