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Visual Life Sciences Workflow Design Using Distributed and Heterogeneous Resources
16 references·0 citing·38 second hop
Visual Life Sciences Workflow Design Using Distributed and Heterogeneous Resources (2018)Visual Life Sciences Workflow Design Usin…BioPartsDB: a synthetic biology workflow web-application for education and research (2016)BioPartsDB: a synthetic biolo…Nexus: A modular workflow management system for quantum simulation codes (2015)Nexus: A modular workflow man…Life science data analysis workflow development using the bioextract server leveraging the iPlant collaborative cyberinfrastructure (2014)Life science data analysis wo…Executing SADI services in Galaxy (2014)Executing SADI services in Ga…Designing Integrated Computational Biology Pipelines Visually (2013)Designing Integrated Computat…Integrating diverse databases into an unified analysis framework: a Galaxy approach (2011)Integrating diverse databases…Efficient entity resolution for large heterogeneous information spaces (2011)Efficient entity resolution f…CDK-Taverna: an open workflow environment for cheminformatics (2010)CDK-Taverna: an open workflow…Behavior based record linkage (2010)Behavior based record linkageA declarative language and toolkit for scientific workflow implementation and execution (2010)A declarative language and to…Declarative workflows: Balancing between flexibility and support (2009)Declarative workflows: Balanc…Data fusion (2009)Data fusionBioExtract Server—An Integrated Workflow-Enabling System to Access and Analyze Heterogeneous, Distributed Biomolecular Data (2008)BioExtract Server—An Integrat…Taverna: a tool for building and running workflows of services (2006)Taverna: a tool for building …Kepler: an extensible system for design and execution of scientific workflows (2004)Kepler: an extensible system …Kepler: An Extensible System for Design and Execution of Scientific Workflows (2004)Kepler: An Extensible System …The merge/purge problem for large databases (1995)A comparison of string distance metrics for name-matching tasks (2003)Duplicate Record Detection: A Survey (2006)Schema-Agnostic Progressive Entity Resolution (2018)Three-dimensional Entity Resolution with JedAI (2020)The Four Generations of Entity Resolution (2021)An overview of workflow management: From process modeling to workflow automation infrastructure (1995)Adeptflex—Supporting Dynamic Changes of Workflows Without Losing Control (1998)THE APPLICATION OF PETRI NETS TO WORKFLOW MANAGEMENT (1998)Enabling Flexibility in Process-Aware Information Systems (2012)Knowledge-Intensive Processes: Characteristics, Requirements and Analysis of Contemporary Approaches (2014)Business Process Variability Modeling (2017)The Eigentrust algorithm for reputation management in P2P networks (2003)Data fusion (2009)Foundations of Data Quality Management (2012)Less is more (2012)Data Cleaning (2019)A framework for collaborative analysis of ENCODE data: Making large-scale analyses biologist-friendly (2007)Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences (2010)Galaxy: A Web‐Based Genome Analysis Tool for Experimentalists (2010)Bioportainer Workbench: a versatile and user-friendly system that integrates implementation, management, and use of bioinformatics resources in Docker environments (2019)Taverna: a tool for the composition and enactment of bioinformatics workflows (2004)Characterization of scientific workflows (2008)The Taverna workflow suite: designing and executing workflows of Web Services on the desktop, web or in the cloud (2013)The Stable Marriage Problem: Structure and Algorithms (1991)Real-world Data is Dirty: Data Cleansing and The Merge/Purge Problem (1998)Modeling entity evolution for temporal record matching (2014)Bioclipse: an open source workbench for chemo- and bioinformatics (2007)Workflows For E-Science: Scientific Workflows For Grids (2007)CaGrid Workflow Toolkit: A taverna based workflow tool for cancer grid (2010)The Evolution of myExperiment (2010)Software review: the KNIME workflow environment and its applications in genetic programming and machine learning (2015)Mobyle: a new full web bioinformatics framework (2009)The iPlant Collaborative: Cyberinfrastructure for Plant Biology (2011)FireWorks: a dynamic workflow system designed for high‐throughput applications (2015)The TimeStudio Project: An open source scientific workflow system for the behavioral and brain sciences (2015)Tools and techniques for computational reproducibility (2016)The future of scientific workflows (2017)
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References

  • 2006Taverna: a tool for building and running workflows of services944 cited
  • 2004Kepler: An Extensible System for Design and Execution of Scientific Workflows745 cited
  • 2009Declarative workflows: Balancing between flexibility and support531 cited
  • 2004Kepler: an extensible system for design and execution of scientific workflows429 cited
  • 2009Data fusion202 cited
  • 2015Nexus: A modular workflow management system for quantum simulation codes92 cited
  • 2011Efficient entity resolution for large heterogeneous information spaces87 cited
  • 2010CDK-Taverna: an open workflow environment for cheminformatics64 cited
  • 2011Integrating diverse databases into an unified analysis framework: a Galaxy approach62 cited
  • 2010Behavior based record linkage33 cited
  • 2008BioExtract Server—An Integrated Workflow-Enabling System to Access and Analyze Heterogeneous, Distributed Biomolecular Data23 cited
  • 2010A declarative language and toolkit for scientific workflow implementation and execution16 cited
  • 2013Designing Integrated Computational Biology Pipelines Visually9 cited
  • 2014Executing SADI services in Galaxy9 cited
  • 2014Life science data analysis workflow development using the bioextract server leveraging the iPlant collaborative cyberinfrastructure

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8 cited
  • 2016BioPartsDB: a synthetic biology workflow web-application for education and research8 cited
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