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nf-core : Community curated bioinformatics pipelines
9 references·1 citing·29 second hop
nf-core : Community curated bioinformatics pipelines (2019)nf-core : Community curated bioinformatic…The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2018 update (2018)The Galaxy platform for acces…Bioconda: sustainable and comprehensive software distribution for the life sciences (2018)Bioconda: sustainable and com…The Dockstore: enabling modular, community-focused sharing of Docker-based genomics tools and workflows (2017)The Dockstore: enabling modul…Practical Computational Reproducibility in the Life Sciences (2017)Practical Computational Repro…Nextflow enables reproducible computational workflows (2017)Nextflow enables reproducible…BioContainers: an open-source and community-driven framework for software standardization (2017)BioContainers: an open-source…Common Workflow Language, draft 3 (2016)Common Workflow Language, dra…1,500 scientists lift the lid on reproducibility (2016)1,500 scientists lift the lid…Dissemination of scientific software with Galaxy ToolShed (2014)Dissemination of scientific s…Compi Hub: A Public Repository for Sharing and Discovering Compi Pipelines (2020)Compi Hub: A Public Repositor…Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences (2010)Next-generation sequencing data interpretation: enhancing reproducibility and accessibility (2012)Genomics Virtual Laboratory: A Practical Bioinformatics Workbench for the Cloud (2015)Scientific workflows for computational reproducibility in the life sciences: Status, challenges and opportunities (2017)Bioboxes: standardised containers for interchangeable bioinformatics software (2015)CWL-Airflow: a lightweight pipeline manager supporting Common Workflow Language (2019)Data Lakes, Clouds, and Commons: A Review of Platforms for Analyzing and Sharing Genomic Data (2019)Containers for computational reproducibility (2023)The Taverna workflow suite: designing and executing workflows of Web Services on the desktop, web or in the cloud (2013)The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2016 update (2016)Towards FAIR principles for research software (2019)Towards reproducible computational drug discovery (2020)Reproducible, scalable, and shareable analysis pipelines with bioinformatics workflow managers (2021)Snakemake—a scalable bioinformatics workflow engine (2012)Reproducibility: A tragedy of errors (2016)Sustainable data analysis with Snakemake (2021)The EMBL-EBI Job Dispatcher sequence analysis tools framework in 2024 (2024)A manifesto for reproducible science (2017)The Galaxy platform for accessible, reproducible, and collaborative data analyses: 2024 update (2024)Galaxy: A platform for interactive large-scale genome analysis (2005)Singularity: Scientific containers for mobility of compute (2017)Sustainable data analysis with Snakemake (2021)Jupyter Notebooks – a publishing format for reproducible computational workflows (2016)Streamlining data-intensive biology with workflow systems (2021)The five pillars of computational reproducibility: bioinformatics and beyond (2023)Empowering bioinformatics communities with Nextflow and nf-core (2025)The nf-core framework for community-curated bioinformatics pipelines (2020)Scientific workflows: Past, present and future (2017)BioExcel Building Blocks, a software library for interoperable biomolecular simulation workflows (2019)
this work references cited by second hop

References

  • 20161,500 scientists lift the lid on reproducibility4,200 cited
  • 2017Nextflow enables reproducible computational workflows3,985 cited
  • 2018The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2018 update3,659 cited
  • 2018Bioconda: sustainable and comprehensive software distribution for the life sciences1,652 cited
  • 2017BioContainers: an open-source and community-driven framework for software standardization798 cited
  • 2014Dissemination of scientific software with Galaxy ToolShed257 cited
  • 2016Common Workflow Language, draft 3204 cited
  • 2017Practical Computational Reproducibility in the Life Sciences158 cited
  • 2017The Dockstore: enabling modular, community-focused sharing of Docker-based genomics tools and workflows83 cited

Cited by

  • 2020Compi Hub: A Public Repository for Sharing and Discovering Compi Pipelines11 cited

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