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snakePipes: facilitating flexible, scalable and integrative epigenomic analysis
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snakePipes: facilitating flexible, scalable and integrative epigenomic analysis (2019)snakePipes: facilitating flexible, scalab…Bioconda: sustainable and comprehensive software distribution for the life sciences (2018)Bioconda: sustainable and com…Nextflow enables reproducible computational workflows (2017)Nextflow enables reproducible…A review of bioinformatic pipeline frameworks (2016)A review of bioinformatic pip…Snakemake—a scalable bioinformatics workflow engine (2012)Snakemake—a scalable bioinfor…Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences (2010)Galaxy: a comprehensive appro…Design Patterns: Elements of Reusable Object-Oriented Software (1994)Bioconductor: open software development for computational biology and bioinformatics (2004)The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2016 update (2016)The Taverna workflow suite: designing and executing workflows of Web Services on the desktop, web or in the cloud (2013)Scientific workflows for computational reproducibility in the life sciences: Status, challenges and opportunities (2017)Systematic benchmarking of omics computational tools (2019)Reproducible, scalable, and shareable analysis pipelines with bioinformatics workflow managers (2021)Reproducibility: A tragedy of errors (2016)The nf-core framework for community-curated bioinformatics pipelines (2020)The EMBL-EBI Job Dispatcher sequence analysis tools framework in 2024 (2024)1,500 scientists lift the lid on reproducibility (2016)A manifesto for reproducible science (2017)The Galaxy platform for accessible, reproducible, and collaborative data analyses: 2024 update (2024)Sustainable data analysis with Snakemake (2021)
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References

  • 2017Nextflow enables reproducible computational workflows3,985 cited
  • 2010Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences3,455 cited
  • 2012Snakemake—a scalable bioinformatics workflow engine2,775 cited
  • 2018Bioconda: sustainable and comprehensive software distribution for the life sciences1,652 cited
  • 2016A review of bioinformatic pipeline frameworks250 cited

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