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GenPipes: an open-source framework for distributed and scalable genomic analyses
8 references·4 citing·26 second hop
GenPipes: an open-source framework for distributed and scalable genomic analyses (2019)GenPipes: an open-source framework for di…Nextflow enables reproducible computational workflows (2017)Nextflow enables reproducible…Kronos: a workflow assembler for genome analytics and informatics (2017)Kronos: a workflow assembler …The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2016 update (2016)The Galaxy platform for acces…Omics Pipe: a community-based framework for reproducible multi-omics data analysis (2015)Omics Pipe: a community-based…Genome Modeling System: A Knowledge Management Platform for Genomics (2015)Genome Modeling System: A Kno…BigDataScript: a scripting language for data pipelines (2014)BigDataScript: a scripting la…Snakemake—a scalable bioinformatics workflow engine (2012)Snakemake—a scalable bioinfor…Bpipe: a tool for running and managing bioinformatics pipelines (2012)Bpipe: a tool for running and…Cinco de Bio: A Low-Code Platform for Domain-Specific Workflows for Biomedical Imaging Research (2024)Cinco de Bio: A Low-Code Plat…Reproducible, scalable, and shareable analysis pipelines with bioinformatics workflow managers (2021)Reproducible, scalable, and s…Improving Pipelining Tools for Pre-processing Data. (2021)Improving Pipelining Tools fo…Big data in biology: The hope and present-day challenges in it (2020)Big data in biology: The hope…Taverna: a tool for the composition and enactment of bioinformatics workflows (2004)Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences (2010)Ruffus: a lightweight Python library for computational pipelines (2010)Sustainable data analysis with Snakemake (2021)The Taverna workflow suite: designing and executing workflows of Web Services on the desktop, web or in the cloud (2013)A review of bioinformatic pipeline frameworks (2016)SUSHI: an exquisite recipe for fully documented, reproducible and reusable NGS data analysis (2016)Galaxy: A platform for interactive large-scale genome analysis (2005)Does Gamification Work? -- A Literature Review of Empirical Studies on Gamification (2014)What does research reproducibility mean? (2016)Reproducibility: A tragedy of errors (2016)The EMBL-EBI Job Dispatcher sequence analysis tools framework in 2024 (2024)Taverna: a tool for building and running workflows of services (2006)The big challenges of big data (2013)0s and 1s in marine molecular research: a regional HPC perspective (2021)A High Performance Computing Platform for Big Biological Data Analysis (2023)Biological big-data sources, problems of storage, computational issues, and applications: a comprehensive review (2024)The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2018 update (2018)The nf-core framework for community-curated bioinformatics pipelines (2020)Spatial machine learning: new opportunities for regional science (2021)The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2022 update (2022)An AI Agent for Fully Automated Multi‐Omic Analyses (2024)Isabl Platform, a digital biobank for processing multimodal patient data (2020)Bioconda: sustainable and comprehensive software distribution for the life sciences (2018)uap: reproducible and robust HTS data analysis (2019)Impact of concurrency on the performance of a whole exome sequencing pipeline (2021)
this work references cited by second hop

References

  • 2017Nextflow enables reproducible computational workflows3,985 cited
  • 2012Snakemake—a scalable bioinformatics workflow engine2,775 cited
  • 2016The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2016 update2,149 cited
  • 2012Bpipe: a tool for running and managing bioinformatics pipelines164 cited
  • 2015Genome Modeling System: A Knowledge Management Platform for Genomics78 cited
  • 2015Omics Pipe: a community-based framework for reproducible multi-omics data analysis75 cited
  • 2014BigDataScript: a scripting language for data pipelines34 cited
  • 2017Kronos: a workflow assembler for genome analytics and informatics13 cited

Cited by

  • 2021Reproducible, scalable, and shareable analysis pipelines with bioinformatics workflow managers232 cited
  • 2020Big data in biology: The hope and present-day challenges in it56 cited
  • 2024Cinco de Bio: A Low-Code Platform for Domain-Specific Workflows for Biomedical Imaging Research13 cited
  • 2021Improving Pipelining Tools for Pre-processing Data.4 cited

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