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ReproPhylo: An Environment for Reproducible Phylogenomics
8 references·1 citing·31 second hop
ReproPhylo: An Environment for Reproducible Phylogenomics (2015)ReproPhylo: An Environment for Reproducib…An introduction to Docker for reproducible research (2015)An introduction to Docker for…Reproducibility in Science (2014)Reproducibility in ScienceJournals unite for reproducibility (2014)Journals unite for reproducib…Galaxy: A Web‐Based Genome Analysis Tool for Experimentalists (2010)Galaxy: A Web‐Based Genome An…Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences (2010)Galaxy: a comprehensive appro…Creating the CIPRES Science Gateway for inference of large phylogenetic trees (2010)Creating the CIPRES Science G…Methodology capture: discriminating between the "best" and the rest of community practice (2008)Methodology capture: discrimi…Galaxy: A platform for interactive large-scale genome analysis (2005)Galaxy: A platform for intera…An architecture for genomics analysis in a clinical setting using Galaxy and Docker (2017)An architecture for genomics …Reproducible Research in Computational Science (2011)Computational Reproducibility in Archaeological Research: Basic Principles and a Case Study of Their Implementation (2016)Scientific workflows for computational reproducibility in the life sciences: Status, challenges and opportunities (2017)Automated assessment of psychiatric disorders using speech: A systematic review (2020)Exploring internal stickiness: Impediments to the transfer of best practice within the firm (1996)Meta-analysis: Principles and procedures (1997)Bioconductor: open software development for computational biology and bioinformatics (2004)Extracting patterns of database and software usage from the bioinformatics literature (2014)The role of metadata in reproducible computational research (2021)Design Patterns: Elements of Reusable Object-Oriented Software (1994)Nextflow enables reproducible computational workflows (2017)Confirmation Bias: A Ubiquitous Phenomenon in Many Guises (1998)Policy: NIH plans to enhance reproducibility (2014)Reporting guidelines for health care simulation research: extensions to the CONSORT and STROBE statements (2016)Redefine statistical significance (2017)The Power of Bias in Economics Research (2017)Snakemake—a scalable bioinformatics workflow engine (2012)Ten Simple Rules for Reproducible Computational Research (2013)The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2016 update (2016)Ten common misconceptions about Galaxy (and why they are wrong!) (2026)Launching genomics into the cloud: deployment of Mercury, a next generation sequence analysis pipeline (2014)Managing, Analysing, and Integrating Big Data in Medical Bioinformatics: Open Problems and Future Perspectives (2014)Towards reproducible computational drug discovery (2020)The iPlant Collaborative: Cyberinfrastructure for Plant Biology (2011)A RESTful API for Access to Phylogenetic Tools via the CIPRES Science Gateway (2015)A late Middle Pleistocene Denisovan mandible from the Tibetan Plateau (2019)Risk of Bias in Reports of In Vivo Research: A Focus for Improvement (2015)Open science saves lives: lessons from the COVID-19 pandemic (2021)Power Analysis for Parameter Estimation in Structural Equation Modeling: A Discussion and Tutorial (2021)The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2018 update (2018)The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2022 update (2022)
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References

  • 2010Creating the CIPRES Science Gateway for inference of large phylogenetic trees11,421 cited
  • 2010Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences3,455 cited
  • 2005Galaxy: A platform for interactive large-scale genome analysis2,027 cited
  • 2010Galaxy: A Web‐Based Genome Analysis Tool for Experimentalists1,430 cited
  • 2015An introduction to Docker for reproducible research1,058 cited
  • 2014Reproducibility in Science1,031 cited
  • 2014Journals unite for reproducibility305 cited
  • 2008Methodology capture: discriminating between the "best" and the rest of community practice21 cited

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  • 2017An architecture for genomics analysis in a clinical setting using Galaxy and Docker12 cited

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