Articlegold2019

The bio.tools registry of software tools and data resources for the life sciences

Jon Ison · Hans Ienasescu · Piotr Jaroslaw Chmura · Emil Rydza · Hervé Ménager · Matúš Kalaš +30 more

88 citations0/0 files storedGenome biology

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Scientific Computing and Data Management Research Data Management Practices Genetics, Bioinformatics, and Biomedical Research

Abstract

Bioinformaticians and biologists rely increasingly upon workflows for the flexible utilization of the many life science tools that are needed to optimally convert data into knowledge. We outline a pan-European enterprise to provide a catalogue ( https://bio.tools ) of tools and databases that can be used in these workflows. bio.tools not only lists where to find resources, but also provides a wide variety of practical information.

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2018The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2018 update 2017BioContainers: an open-source and community-driven framework for software standardization 2015Tools and data services registry: a community effort to document bioinformatics resources

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2025WorkflowHub: a registry for computational workflows 2023Ten quick tips for building FAIR workflows 2023Developing and reusing bioinformatics data analysis pipelines using scientific workflow systems 2021BioContainers Registry: Searching Bioinformatics and Proteomics Tools, Packages, and Containers 2024Introduction of the Capsules environment to support further growth of the SBGrid structural biology software collection 2021Bioimage analysis workflows: community resources to navigate through a complex ecosystem 2021biotoolsSchema: a formalized schema for bioinformatics software description 2022Nine best practices for research software registries and repositories

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