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Surviving the deluge of biosimulation data
4 references·2 citing·17 second hop
Surviving the deluge of biosimulation data (2019)Surviving the deluge of biosimulation dataThe EMBL-EBI search and sequence analysis tools APIs in 2019 (2019)The EMBL-EBI search and seque…Sharing Data from Molecular Simulations (2019)Sharing Data from Molecular S…Programmatic access to bioinformatics tools from EMBL-EBI update: 2017 (2017)Programmatic access to bioinf…An efficient and extensible format, library, and API for binary trajectory data from molecular simulations (2013)An efficient and extensible f…A new paradigm for molecular dynamics databases: the COVID-19 database, the legacy of a titanic community effort (2023)A new paradigm for molecular …BioExcel Building Blocks Workflows (BioBB-Wfs), an integrated web-based platform for biomolecular simulations (2022)BioExcel Building Blocks Work…NetCDF: an interface for scientific data access (1990)Software for Portable Scientific Data Management (1993)libxtc: an efficient library for reading XTC-compressed MD trajectory data (2021)Analysis Tool Web Services from the EMBL-EBI (2013)The European Bioinformatics Institute in 2018: tools, infrastructure and training (2018)Using EMBL‐EBI Services via Web Interface and Programmatically via Web Services (2019)Using EMBL‐EBI Services via Web Interface and Programmatically via Web Services (2024)Open science is a research accelerator (2011)Reproducibility vs. Replicability: A Brief History of a Confused Terminology (2018)Promoting transparency and reproducibility in enhanced molecular simulations (2019)Simulation Foundry: Automated and F.A.I.R. Molecular Modeling (2020)Martignac: Computational Workflows for Reproducible, Traceable, and Composable Coarse-Grained Martini Simulations (2024)Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences (2010)The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2016 update (2016)Bioconda: sustainable and comprehensive software distribution for the life sciences (2018)Biological big-data sources, problems of storage, computational issues, and applications: a comprehensive review (2024)Robustness in biomolecular simulations: Addressing challenges in data generation, analysis, and curation (2025)
this work references cited by second hop

References

  • 2019The EMBL-EBI search and sequence analysis tools APIs in 20194,166 cited
  • 2017Programmatic access to bioinformatics tools from EMBL-EBI update: 2017295 cited
  • 2019Sharing Data from Molecular Simulations55 cited
  • 2013An efficient and extensible format, library, and API for binary trajectory data from molecular simulations48 cited

Cited by

  • 2023A new paradigm for molecular dynamics databases: the COVID-19 database, the legacy of a titanic community effort35 cited
  • 2022BioExcel Building Blocks Workflows (BioBB-Wfs), an integrated web-based platform for biomolecular simulations15 cited

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