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Arteria: An automation system for a sequencing core facility
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Arteria: An automation system for a sequencing core facility (2019)Arteria: An automation system for a seque…Towards agile large-scale predictive modelling in drug discovery with flow-based programming design principles (2016)Towards agile large-scale pre…The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2016 update (2016)The Galaxy platform for acces…Recommendations on e-infrastructures for next-generation sequencing (2016)Recommendations on e-infrastr…Common Workflow Language, draft 3 (2016)Common Workflow Language, dra…A review of bioinformatic pipeline frameworks (2016)A review of bioinformatic pip…Experiences with workflows for automating data-intensive bioinformatics (2015)Experiences with workflows fo…Big Data: Astronomical or Genomical? (2015)Big Data: Astronomical or Gen…A global reference for human genetic variation (2015)A global reference for human …An automated infrastructure to support high-throughput bioinformatics (2014)An automated infrastructure t…Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences (2010)The Fourth Paradigm: Data-Intensive Scientific Discovery [Point of View] (2011)The big challenges of big data (2013)Galaxy: A platform for interactive large-scale genome analysis (2005)Snakemake—a scalable bioinformatics workflow engine (2012)Jug: Software for Parallel Reproducible Computation in Python (2017)SciPipe: A workflow library for agile development of complex and dynamic bioinformatics pipelines (2019)Developing and reusing bioinformatics data analysis pipelines using scientific workflow systems (2023)The Taverna workflow suite: designing and executing workflows of Web Services on the desktop, web or in the cloud (2013)Scientific workflows for computational reproducibility in the life sciences: Status, challenges and opportunities (2017)snakePipes: facilitating flexible, scalable and integrative epigenomic analysis (2019)Lessons learned from implementing a national infrastructure in Sweden for storage and analysis of next-generation sequencing data (2013)Tracking the NGS revolution: managing life science research on shared high-performance computing clusters (2018)Ancient gene flow from early modern humans into Eastern Neanderthals (2016)A high-coverage Neandertal genome from Vindija Cave in Croatia (2017)International meta-analysis of PTSD genome-wide association studies identifies sex- and ancestry-specific genetic risk loci (2019)Situating Ecology as a Big-Data Science: Current Advances, Challenges, and Solutions (2018)A Roadmap for HEP Software and Computing R&D for the 2020s (2019)Reproducible, scalable, and shareable analysis pipelines with bioinformatics workflow managers (2021)What does research reproducibility mean? (2016)Bioconda: sustainable and comprehensive software distribution for the life sciences (2018)The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2018 update (2018)HyperLoom (2018)Building Domain-Specific Machine Learning Workflows: A Conceptual Framework for the State of the Practice (2023)Cinco de Bio: A Low-Code Platform for Domain-Specific Workflows for Biomedical Imaging Research (2024)Practical Computational Reproducibility in the Life Sciences (2017)Scientific workflows: Past, present and future (2017)BioExcel Building Blocks, a software library for interoperable biomolecular simulation workflows (2019)
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References

  • 2015A global reference for human genetic variation18,217 cited
  • 2016The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2016 update2,149 cited
  • 2015Big Data: Astronomical or Genomical?1,340 cited
  • 2016A review of bioinformatic pipeline frameworks250 cited
  • 2016Common Workflow Language, draft 3204 cited
  • 2015Experiences with workflows for automating data-intensive bioinformatics64 cited
  • 2016Towards agile large-scale predictive modelling in drug discovery with flow-based programming design principles33 cited
  • 2016Recommendations on e-infrastructures for next-generation sequencing22 cited
  • 2014An automated infrastructure to support high-throughput bioinformatics6 cited

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