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Watchdog 2.0: New developments for reusability, reproducibility, and workflow execution
5 references·1 citing·16 second hop
Watchdog 2.0: New developments for reusability, reproducibility, and workflow execution (2020)Watchdog 2.0: New developments for reusab…Watchdog – a workflow management system for the distributed analysis of large-scale experimental data (2018)Watchdog – a workflow managem…Nextflow enables reproducible computational workflows (2017)Nextflow enables reproducible…Snakemake—a scalable bioinformatics workflow engine (2012)Snakemake—a scalable bioinfor…KNIME: The Konstanz Information Miner (2008)KNIME: The Konstanz Informati…Using Galaxy to Perform Large‐Scale Interactive Data Analyses (2007)Using Galaxy to Perform Large…An Empirical Investigation on the Challenges in Scientific Workflow Systems Development (2025)An Empirical Investigation on…Galaxy: A platform for interactive large-scale genome analysis (2005)Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences (2010)Galaxy: A Web‐Based Genome Analysis Tool for Experimentalists (2010)Integrating diverse databases into an unified analysis framework: a Galaxy approach (2011)Bringing numerous methods for expression and promoter analysis to a public cloud computing service (2017)GalaxyTrakr: a distributed analysis tool for public health whole genome sequence data accessible to non-bioinformaticians (2021)Reproducibility: A tragedy of errors (2016)The nf-core framework for community-curated bioinformatics pipelines (2020)The EMBL-EBI Job Dispatcher sequence analysis tools framework in 2024 (2024)Interrater reliability: the kappa statistic (2012)Scientific workflows for bibliometrics (2016)Reproducible, scalable, and shareable analysis pipelines with bioinformatics workflow managers (2021)Sustainable data analysis with Snakemake (2021)Bioconda: sustainable and comprehensive software distribution for the life sciences (2018)Sustainable data analysis with Snakemake (2021)Impact of concurrency on the performance of a whole exome sequencing pipeline (2021)
this work references cited by second hop

References

  • 2017Nextflow enables reproducible computational workflows3,985 cited
  • 2012Snakemake—a scalable bioinformatics workflow engine2,775 cited
  • 2008KNIME: The Konstanz Information Miner1,401 cited
  • 2007Using Galaxy to Perform Large‐Scale Interactive Data Analyses143 cited
  • 2018Watchdog – a workflow management system for the distributed analysis of large-scale experimental data30 cited

Cited by

  • 2025An Empirical Investigation on the Challenges in Scientific Workflow Systems Development8 cited

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