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Compi Hub: A Public Repository for Sharing and Discovering Compi Pipelines
9 references·0 citing·26 second hop
Compi Hub: A Public Repository for Sharing and Discovering Compi Pipelines (2020)Compi Hub: A Public Repository for Sharin…Workflow systems turn raw data into scientific knowledge (2019)Workflow systems turn raw dat…SciPipe: A workflow library for agile development of complex and dynamic bioinformatics pipelines (2019)SciPipe: A workflow library f…nf-core : Community curated bioinformatics pipelines (2019)nf-core : Community curated b…The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2018 update (2018)The Galaxy platform for acces…Nextflow enables reproducible computational workflows (2017)Nextflow enables reproducible…1,500 scientists lift the lid on reproducibility (2016)1,500 scientists lift the lid…Dissemination of scientific software with Galaxy ToolShed (2014)Dissemination of scientific s…The Taverna workflow suite: designing and executing workflows of Web Services on the desktop, web or in the cloud (2013)The Taverna workflow suite: d…Snakemake—a scalable bioinformatics workflow engine (2012)Snakemake—a scalable bioinfor…Taverna: a tool for building and running workflows of services (2006)Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences (2010)AiiDA: automated interactive infrastructure and database for computational science (2015)A review of bioinformatic pipeline frameworks (2016)BioContainers: an open-source and community-driven framework for software standardization (2017)Next-generation sequencing data interpretation: enhancing reproducibility and accessibility (2012)Genomics Virtual Laboratory: A Practical Bioinformatics Workbench for the Cloud (2015)Practical Computational Reproducibility in the Life Sciences (2017)Scientific workflows for computational reproducibility in the life sciences: Status, challenges and opportunities (2017)Reproducibility: A tragedy of errors (2016)The EMBL-EBI Job Dispatcher sequence analysis tools framework in 2024 (2024)Galaxy: A platform for interactive large-scale genome analysis (2005)The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2016 update (2016)Singularity: Scientific containers for mobility of compute (2017)Sustainable data analysis with Snakemake (2021)Nipype: A Flexible, Lightweight and Extensible Neuroimaging Data Processing Framework in Python (2011)A Serverless Tool for Platform Agnostic Computational Experiment Management (2019)Compi: a framework for portable and reproducible pipelines (2021)Cinco de Bio: A Low-Code Platform for Domain-Specific Workflows for Biomedical Imaging Research (2024)Bioconda: sustainable and comprehensive software distribution for the life sciences (2018)Sustainable data analysis with Snakemake (2021)A manifesto for reproducible science (2017)The nf-core framework for community-curated bioinformatics pipelines (2020)Challenge to scientists: does your ten-year-old code still run? (2020)The Dockstore: enhancing a community platform for sharing reproducible and accessible computational protocols (2021)Using prototyping to choose a bioinformatics workflow management system (2021)
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References

  • 20161,500 scientists lift the lid on reproducibility4,200 cited
  • 2017Nextflow enables reproducible computational workflows3,985 cited
  • 2018The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2018 update3,659 cited
  • 2012Snakemake—a scalable bioinformatics workflow engine2,775 cited
  • 2013The Taverna workflow suite: designing and executing workflows of Web Services on the desktop, web or in the cloud678 cited
  • 2014Dissemination of scientific software with Galaxy ToolShed257 cited
  • 2019Workflow systems turn raw data into scientific knowledge72 cited
  • 2019nf-core : Community curated bioinformatics pipelines49 cited
  • 2019SciPipe: A workflow library for agile development of complex and dynamic bioinformatics pipelines43 cited

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