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Publishing reproducible dynamic kinetic models
16 references·1 citing·39 second hop
Publishing reproducible dynamic kinetic models (2020)Publishing reproducible dynamic kinetic m…American Political Science Review (2020)American Political Science Re…Who Leads? Who Follows? Measuring Issue Attention and Agenda Setting by Legislators and the Mass Public Using Social Media Data (2019)Who Leads? Who Follows? Measu…Reproducibility and Replicability in Science (2019)Reproducibility and Replicabi…Reproducibility vs. Replicability: A Brief History of a Confused Terminology (2018)Reproducibility vs. Replicabi…KBase: The United States Department of Energy Systems Biology Knowledgebase (2018)KBase: The United States Depa…Is science really facing a reproducibility crisis, and do we need it to? (2018)Is science really facing a re…Most computational hydrology is not reproducible, so is it really science? (2016)Most computational hydrology …Academic Research in the 21st Century: Maintaining Scientific Integrity in a Climate of Perverse Incentives and Hypercompetition (2016)Academic Research in the 21st…1,500 scientists lift the lid on reproducibility (2016)1,500 scientists lift the lid…Replication (2014)ReplicationCOMBINE archive and OMEX format: one file to share all information to reproduce a modeling project (2014)COMBINE archive and OMEX form…The Taverna workflow suite: designing and executing workflows of Web Services on the desktop, web or in the cloud (2013)The Taverna workflow suite: d…Snakemake—a scalable bioinformatics workflow engine (2012)Snakemake—a scalable bioinfor…Reproducible computational biology experiments with SED-ML - The Simulation Experiment Description Markup Language (2011)Reproducible computational bi…myExperiment: a repository and social network for the sharing of bioinformatics workflows (2010)myExperiment: a repository an…Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences (2010)Galaxy: a comprehensive appro…From FAIR to CURE: guidelines for computational models of biological systems (2026)From FAIR to CURE: guidelines…Taverna: a tool for building and running workflows of services (2006)AiiDA: automated interactive infrastructure and database for computational science (2015)A review of bioinformatic pipeline frameworks (2016)BioContainers: an open-source and community-driven framework for software standardization (2017)Design Patterns: Elements of Reusable Object-Oriented Software (1994)Bioconductor: open software development for computational biology and bioinformatics (2004)The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2016 update (2016)Little Science, Big Science (1963)How Many Scientists Fabricate and Falsify Research? A Systematic Review and Meta-Analysis of Survey Data (2009)Growth rates of modern science: A bibliometric analysis based on the number of publications and cited references (2015)Assessing scientists for hiring, promotion, and tenure (2018)Over-optimization of academic publishing metrics: observing Goodhart's Law in action (2019)The Triumph of Nonsense in Management Studies (2019)Reproducible Research in Computational Science (2011)Journal of Computational Neuroscience (2013)What does research reproducibility mean? (2016)Open science, reproducibility, and transparency in ecology (2018)Reproducibility in machine learning for health research: Still a ways to go (2021)Positioning and Power in Academic Publishing: Players, Agents and Agendas (2016)Navigating the maze: the impact of configurability in bioinformatics software (2018)Situating Ecology as a Big-Data Science: Current Advances, Challenges, and Solutions (2018)Advancing Equity and Inclusion in Microbiome Research and Training (2021)An Economic Theory of Democracy. (1958)The Agenda-Setting Function of Mass Media (1972)Macroeconomics and Reality (1980)Short Circuiting Policy (2020)Social Media and Political Agenda Setting (2021)The consequences of online partisan media (2021)Nextflow enables reproducible computational workflows (2017)Bioconda: sustainable and comprehensive software distribution for the life sciences (2018)Sustainable data analysis with Snakemake (2021)A manifesto for reproducible science (2017)The nf-core framework for community-curated bioinformatics pipelines (2020)The replicability crisis and public trust in psychological science (2018)Automation in the Life Science Research Laboratory (2020)To Sobol or not to Sobol? The effects of sampling schemes in systems biology applications (2021)Challenges for assessing replicability in preclinical cancer biology (2021)Replicability, Robustness, and Reproducibility in Psychological Science (2021)Prevalence of questionable research practices, research misconduct and their potential explanatory factors: A survey among academic researchers in The Netherlands (2022)
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References

  • 20161,500 scientists lift the lid on reproducibility4,200 cited
  • 2010Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences3,455 cited
  • 2012Snakemake—a scalable bioinformatics workflow engine2,775 cited
  • 2018KBase: The United States Department of Energy Systems Biology Knowledgebase1,620 cited
  • 2019Reproducibility and Replicability in Science921 cited
  • 2016Academic Research in the 21st Century: Maintaining Scientific Integrity in a Climate of Perverse Incentives and Hypercompetition685 cited
  • 2013The Taverna workflow suite: designing and executing workflows of Web Services on the desktop, web or in the cloud678 cited
  • 2019Who Leads? Who Follows? Measuring Issue Attention and Agenda Setting by Legislators and the Mass Public Using Social Media Data542 cited
  • 2018Reproducibility vs. Replicability: A Brief History of a Confused Terminology426 cited
  • 2018Is science really facing a reproducibility crisis, and do we need it to?416 cited
  • 2010myExperiment: a repository and social network for the sharing of bioinformatics workflows299 cited
  • 2011Reproducible computational biology experiments with SED-ML - The Simulation Experiment Description Markup Language257 cited
  • 2016Most computational hydrology is not reproducible, so is it really science?233 cited

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2020
American Political Science Review
229 cited
  • 2014Replication212 cited
  • 2014COMBINE archive and OMEX format: one file to share all information to reproduce a modeling project170 cited
  • Cited by

    • 2026From FAIR to CURE: guidelines for computational models of biological systems8 cited