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The simulation experiment description markup language (SED-ML): language specification for level 1 version 4
4 references·3 citing·15 second hop
The simulation experiment description markup language (SED-ML): language specification for level 1 version 4 (2021)The simulation experiment description mar…OpenCOR: a modular and interoperable approach to computational biology (2015)OpenCOR: a modular and intero…COMBINE archive and OMEX format: one file to share all information to reproduce a modeling project (2014)COMBINE archive and OMEX form…Reproducible computational biology experiments with SED-ML - The Simulation Experiment Description Markup Language (2011)Reproducible computational bi…Minimum Information About a Simulation Experiment (MIASE) (2011)Minimum Information About a S…The simulation experiment description markup language (SED-ML): language specification for level 1 version 5 (2024)The simulation experiment des…ENCORE: a practical implementation to improve reproducibility and transparency of computational research (2024)ENCORE: a practical implement…Specifications of standards in systems and synthetic biology: status and developments in 2021 (2021)Specifications of standards i…Promoting Coordinated Development of Community-Based Information Standards for Modeling in Biology: The COMBINE Initiative (2015)Models and Simulations as a Service: Exploring the Use of Galaxy for Delivering Computational Models (2016)Best Practices for Making Reproducible Biochemical Models (2020)RunBioSimulations: an extensible web application that simulates a wide range of computational modeling frameworks, algorithms, and formats (2021)A standard protocol for describing individual-based and agent-based models (2006)Accessible Reproducible Research (2010)Ten Simple Rules for Reproducible Computational Research (2013)Proceedings of the 2017 Winter Simulation Conference (2017)Tellurium notebooks—An environment for reproducible dynamical modeling in systems biology (2018)Why Most Published Research Findings Are False (2005)The Strengthening the Reporting of Observational Studies in Epidemiology (STROBE) Statement: Guidelines for Reporting Observational Studies (2007)Nextflow enables reproducible computational workflows (2017)Reporting guidelines for simulation‐based research in social sciences (2012)Strengthening the reporting of empirical simulation studies: Introducing the STRESS guidelines (2018)Reproducibility in systems biology modelling (2021)
this work references cited by second hop

References

  • 2011Reproducible computational biology experiments with SED-ML - The Simulation Experiment Description Markup Language257 cited
  • 2014COMBINE archive and OMEX format: one file to share all information to reproduce a modeling project170 cited
  • 2011Minimum Information About a Simulation Experiment (MIASE)168 cited
  • 2015OpenCOR: a modular and interoperable approach to computational biology115 cited

Cited by

  • 2024ENCORE: a practical implementation to improve reproducibility and transparency of computational research11 cited
  • 2024The simulation experiment description markup language (SED-ML): language specification for level 1 version 57 cited
  • 2021Specifications of standards in systems and synthetic biology: status and developments in 20215 cited

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