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OMEX metadata specification (version 1.2)
3 references·0 citing·11 second hop
OMEX metadata specification (version 1.2) (2021)OMEX metadata specification (version 1.2)Combining computational models, semantic annotations and simulation experiments in a graph database (2015)Combining computational model…COMBINE archive and OMEX format: one file to share all information to reproduce a modeling project (2014)COMBINE archive and OMEX form…Reproducible computational biology experiments with SED-ML - The Simulation Experiment Description Markup Language (2011)Reproducible computational bi…A standard protocol for describing individual-based and agent-based models (2006)Accessible Reproducible Research (2010)Ten Simple Rules for Reproducible Computational Research (2013)Promoting Coordinated Development of Community-Based Information Standards for Modeling in Biology: The COMBINE Initiative (2015)Proceedings of the 2017 Winter Simulation Conference (2017)Tellurium notebooks—An environment for reproducible dynamical modeling in systems biology (2018)Minimum Information About a Simulation Experiment (MIASE) (2011)The Physiome Model Repository 2 (2011)How Modeling Standards, Software, and Initiatives Support Reproducibility in Systems Biology and Systems Medicine (2016)Open modeling and exchange (OMEX) metadata specification version 1.0 (2020)Reproducibility in systems biology modelling (2021)
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References

  • 2011Reproducible computational biology experiments with SED-ML - The Simulation Experiment Description Markup Language257 cited
  • 2014COMBINE archive and OMEX format: one file to share all information to reproduce a modeling project170 cited
  • 2015Combining computational models, semantic annotations and simulation experiments in a graph database53 cited

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