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Ensuring scientific reproducibility in bio-macromolecular modeling via extensive, automated benchmarks
9 references·1 citing·36 second hop
Ensuring scientific reproducibility in bio-macromolecular modeling via extensive, automated benchmarks (2021)Ensuring scientific reproducibility in bi…Challenge to scientists: does your ten-year-old code still run? (2020)Challenge to scientists: does…Putting benchmarks in their rightful place: The heart of computational biology (2018)Putting benchmarks in their r…The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2016 update (2016)The Galaxy platform for acces…Enhancing reproducibility for computational methods (2016)Enhancing reproducibility for…Contextual sensitivity in scientific reproducibility (2016)Contextual sensitivity in sci…1,500 scientists lift the lid on reproducibility (2016)1,500 scientists lift the lid…Estimating the reproducibility of psychological science (2015)Estimating the reproducibilit…Ten Simple Rules for Reproducible Computational Research (2013)Ten Simple Rules for Reproduc…Reproducible Research in Computational Science (2011)Reproducible Research in Comp…A framework for assessing the computational reproducibility of geo-simulation experiments (2025)A framework for assessing the…Why Most Published Research Findings Are False (2005)Conducting Meta-Analyses in R with the metafor Package (2010)Calculating and reporting effect sizes to facilitate cumulative science: a practical primer for t-tests and ANOVAs (2013)Estimating Psychological Networks and their Accuracy: A Tutorial Paper (2016)Redefine statistical significance (2017)A tutorial on regularized partial correlation networks. (2018)Taverna: a tool for the composition and enactment of bioinformatics workflows (2004)Galaxy: A platform for interactive large-scale genome analysis (2005)Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences (2010)Good enough practices in scientific computing. (2017)Preferred reporting items for systematic reviews and meta‐analyses in ecology and evolutionary biology: a PRISMA extension (2021)The Handbook of Social Psychology (1969)Intraclass correlations: Uses in assessing rater reliability. (1979)The weirdest people in the world? (2010)It’s Time to Broaden the Replicability Conversation: Thoughts for and From Clinical Psychological Science (2017)Social Media Elements, Ecologies, and Effects (2019)Lack of Theory Building and Testing Impedes Progress in The Factor and Network Literature (2020)Promoting an open research culture (2015)Researching Mental Health Disorders in the Era of Social Media: Systematic Review (2017)The future of scientific workflows (2017)FAIR Computational Workflows (2019)Workflow systems turn raw data into scientific knowledge (2019)The critical need to foster computational reproducibility (2022)Toward practical transparent verifiable and long-term reproducible research using Guix (2022)Not just for programmers: How GitHub can accelerate collaborative and reproducible research in ecology and evolution (2023)A power primer. (1992)Increasing value and reducing waste in research design, conduct, and analysis (2014)Reproducibility in Science (2014)An introduction to Docker for reproducible research (2015)What does research reproducibility mean? (2016)Bioconda: sustainable and comprehensive software distribution for the life sciences (2018)The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2018 update (2018)A manifesto for reproducible science (2017)The nf-core framework for community-curated bioinformatics pipelines (2020)Essential guidelines for computational method benchmarking (2019)Re-evaluating experimental validation in the Big Data Era: a conceptual argument (2021)
this work references cited by second hop

References

  • 2015Estimating the reproducibility of psychological science8,516 cited
  • 20161,500 scientists lift the lid on reproducibility4,200 cited
  • 2016The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2016 update2,149 cited
  • 2011Reproducible Research in Computational Science1,446 cited
  • 2013Ten Simple Rules for Reproducible Computational Research875 cited
  • 2016Enhancing reproducibility for computational methods413 cited
  • 2016Contextual sensitivity in scientific reproducibility398 cited
  • 2020Challenge to scientists: does your ten-year-old code still run?60 cited
  • 2018Putting benchmarks in their rightful place: The heart of computational biology31 cited

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  • 2025A framework for assessing the computational reproducibility of geo-simulation experiments5 cited

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