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BioSimulators : a central registry of simulation engines and services for recommending specific tools
4 references·1 citing·16 second hop
BioSimulators : a central registry of simulation engines and services for recommending specific tools (2022)BioSimulators : a central registry of sim…CellML 2.0 (2020)CellML 2.0BioModels—15 years of sharing computational models in life science (2019)BioModels—15 years of sharing…The JWS online simulation database (2017)The JWS online simulation dat…COMBINE archive and OMEX format: one file to share all information to reproduce a modeling project (2014)COMBINE archive and OMEX form…From FAIR to CURE: guidelines for computational models of biological systems (2026)From FAIR to CURE: guidelines…A standard protocol for describing individual-based and agent-based models (2006)Accessible Reproducible Research (2010)Ten Simple Rules for Reproducible Computational Research (2013)Promoting Coordinated Development of Community-Based Information Standards for Modeling in Biology: The COMBINE Initiative (2015)Proceedings of the 2017 Winter Simulation Conference (2017)Tellurium notebooks—An environment for reproducible dynamical modeling in systems biology (2018)Reproducible computational biology experiments with SED-ML - The Simulation Experiment Description Markup Language (2011)Publishing reproducible dynamic kinetic models (2020)RunBioSimulations: an extensible web application that simulates a wide range of computational modeling frameworks, algorithms, and formats (2021)1,500 scientists lift the lid on reproducibility (2016)KBase: The United States Department of Energy Systems Biology Knowledgebase (2018)Reproducibility vs. Replicability: A Brief History of a Confused Terminology (2018)The first 10 years of the international coordination network for standards in systems and synthetic biology (COMBINE) (2020)Reproducibility in systems biology modelling (2021)Combining hypothesis- and data-driven neuroscience modeling in FAIR workflows (2022)Addressing barriers in comprehensiveness, accessibility, reusability, interoperability and reproducibility of computational models in systems biology (2022)
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References

  • 2019BioModels—15 years of sharing computational models in life science361 cited
  • 2014COMBINE archive and OMEX format: one file to share all information to reproduce a modeling project170 cited
  • 2020CellML 2.042 cited
  • 2017The JWS online simulation database36 cited

Cited by

  • 2026From FAIR to CURE: guidelines for computational models of biological systems8 cited

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