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Advancing genomic epidemiology by addressing the bioinformatics bottleneck: Challenges, design principles, and a Swiss example
4 references·0 citing·14 second hop
Advancing genomic epidemiology by addressing the bioinformatics bottleneck: Challenges, design principles, and a Swiss example (2022)Advancing genomic epidemiology by address…Sustainable data analysis with Snakemake (2021)Sustainable data analysis wit…Sustainable data analysis with Snakemake (2021)Sustainable data analysis wit…Nextflow enables reproducible computational workflows (2017)Nextflow enables reproducible…Data, disease and diplomacy: GISAID's innovative contribution to global health (2017)Data, disease and diplomacy: …Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences (2010)Snakemake—a scalable bioinformatics workflow engine (2012)Reproducibility: A tragedy of errors (2016)The nf-core framework for community-curated bioinformatics pipelines (2020)The EMBL-EBI Job Dispatcher sequence analysis tools framework in 2024 (2024)1,500 scientists lift the lid on reproducibility (2016)The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2018 update (2018)Reproducible, scalable, and shareable analysis pipelines with bioinformatics workflow managers (2021)The five pillars of computational reproducibility: bioinformatics and beyond (2023)The Galaxy platform for accessible, reproducible, and collaborative data analyses: 2024 update (2024)Science Diplomacy: Introduction to a Boundary Problem (2018)The relationship between innovative human capital and interprovincial economic growth based on panel data model and spatial econometrics (2019)The Recovery, Interpretation and Use of Ancient Pathogen Genomes (2020)Applying the FAIR Principles to computational workflows (2025)
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References

  • 2017Nextflow enables reproducible computational workflows3,985 cited
  • 2017Data, disease and diplomacy: GISAID's innovative contribution to global health1,926 cited
  • 2021Sustainable data analysis with Snakemake1,646 cited
  • 2021Sustainable data analysis with Snakemake785 cited

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