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Cloud-enabled Biodepot workflow builder integrates image processing using Fiji with reproducible data analysis using Jupyter notebooks
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Cloud-enabled Biodepot workflow builder integrates image processing using Fiji with reproducible data analysis using Jupyter notebooks (2022)Cloud-enabled Biodepot workflow builder i…Bioimage analysis workflows: community resources to navigate through a complex ecosystem (2021)Bioimage analysis workflows: …Building Containerized Workflows Using the BioDepot-Workflow-Builder (2019)Building Containerized Workfl…GUIdock: Using Docker Containers with a Common Graphics User Interface to Address the Reproducibility of Research (2016)GUIdock: Using Docker Contain…Bioconductor: open software development for computational biology and bioinformatics (2004)Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences (2010)Promoting an open research culture (2015)Use of application containers and workflows for genomic data analysis (2016)Successes and Struggles with Computational Reproducibility: Lessons from the Fragile Families Challenge (2019)Jupyter Notebooks – a publishing format for reproducible computational workflows (2016)Positioning and Power in Academic Publishing: Players, Agents and Agendas (2016)The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2016 update (2016)Bio-Docklets: virtualization containers for single-step execution of NGS pipelines (2017)Reproducible Bioconductor workflows using browser-based interactive notebooks and containers (2017)The role of metadata in reproducible computational research (2021)The nf-core framework for community-curated bioinformatics pipelines (2020)Sustainable data analysis with Snakemake (2021)Building Domain-Specific Machine Learning Workflows: A Conceptual Framework for the State of the Practice (2023)
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References

  • 2016GUIdock: Using Docker Containers with a Common Graphics User Interface to Address the Reproducibility of Research54 cited
  • 2019Building Containerized Workflows Using the BioDepot-Workflow-Builder29 cited
  • 2021Bioimage analysis workflows: community resources to navigate through a complex ecosystem22 cited

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