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Nextflow in Bioinformatics: Executors Performance Comparison Using Genomics Data
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Nextflow in Bioinformatics: Executors Performance Comparison Using Genomics Data (2023)Nextflow in Bioinformatics: Executors Per…From biomedical cloud platforms to microservices: next steps in FAIR data and analysis (2022)From biomedical cloud platfor…Using prototyping to choose a bioinformatics workflow management system (2021)Using prototyping to choose a…Reproducible, scalable, and shareable analysis pipelines with bioinformatics workflow managers (2021)Reproducible, scalable, and s…Nextflow enables reproducible computational workflows (2017)Nextflow enables reproducible…Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences (2010)Snakemake—a scalable bioinformatics workflow engine (2012)Reproducibility: A tragedy of errors (2016)Sustainable data analysis with Snakemake (2021)The EMBL-EBI Job Dispatcher sequence analysis tools framework in 2024 (2024)The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2018 update (2018)The nf-core framework for community-curated bioinformatics pipelines (2020)BioContainers: an open-source and community-driven framework for software standardization (2017)PhenoMeNal: processing and analysis of metabolomics data in the cloud (2018)Towards FAIR principles for research software (2019)Federated and reusable processing of Earth observation data (2025)Spatial machine learning: new opportunities for regional science (2021)An AI Agent for Fully Automated Multi‐Omic Analyses (2024)Empowering bioinformatics communities with Nextflow and nf-core (2025)
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References

  • 2017Nextflow enables reproducible computational workflows3,985 cited
  • 2021Reproducible, scalable, and shareable analysis pipelines with bioinformatics workflow managers228 cited
  • 2021Using prototyping to choose a bioinformatics workflow management system28 cited
  • 2022From biomedical cloud platforms to microservices: next steps in FAIR data and analysis27 cited

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