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A Practical Guide to Reproducible Modeling for Biochemical Networks · Study

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ChapterA Practical Guide to Reproducible Modeling for Biochemical Networks

Veronica L. Porubsky2023

Chapter2023

A Practical Guide to Reproducible Modeling for Biochemical Networks

Veronica L. Porubsky · Herbert M. Sauro

4 citations·0/0 files stored·Methods in molecular biology

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Scientific Computing and Data Management Microbial Metabolic Engineering and Bioproduction Gene Regulatory Network Analysis

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References

2011Believe it or not: how much can we rely on published data on potential drug targets?2011Reproducible Research in Computational Science 2013Ten Simple Rules for Reproducible Computational Research 2011Open science is a research accelerator 2011Reproducible computational biology experiments with SED-ML - The Simulation Experiment Description Markup Language 2014COMBINE archive and OMEX format: one file to share all information to reproduce a modeling project 2021Reproducibility in systems biology modelling 2013BioServices: a common Python package to access biological Web Services programmatically

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2020Best Practices for Making Reproducible Biochemical Modelsreview · 11 shared references 2021Practical resources for enhancing the reproducibility of mechanistic modeling in systems biologyreview · 8 shared references 2020Executable Simulation Model of the Liverchapter · 7 shared references 2016How Modeling Standards, Software, and Initiatives Support Reproducibility in Systems Biology and Systems Medicinearticle · 6 shared references 2020Publishing reproducible dynamic kinetic modelsarticle · 6 shared references 2026From FAIR to CURE: guidelines for computational models of biological systemsreview · 6 shared references

Details

Year2023

Typechapter

Published2023-01-01

VenueMethods in molecular biology

ISSN-L1064-3745

Languageen

Citations4

Files0 public / 0

ShelfScientific Computing and Data Management

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doi10.1007/978-1-0716-3008-2_5

openalex_workW4366351897

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