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Neurodesk: an accessible, flexible and portable data analysis environment for reproducible neuroimaging
16 references·2 citing·36 second hop
Neurodesk: an accessible, flexible and portable data analysis environment for reproducible neuroimaging (2024)Neurodesk: an accessible, flexible and po…Replicability, Robustness, and Reproducibility in Psychological Science (2021)Replicability, Robustness, an…Clinica: An Open-Source Software Platform for Reproducible Clinical Neuroscience Studies (2021)Clinica: An Open-Source Softw…The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2018 update (2018)The Galaxy platform for acces…Reproducibility vs. Replicability: A Brief History of a Confused Terminology (2018)Reproducibility vs. Replicabi…Many Analysts, One Data Set: Making Transparent How Variations in Analytic Choices Affect Results (2018)Many Analysts, One Data Set: …Binder 2.0 - Reproducible, interactive, sharable environments for science at scale (2018)Binder 2.0 - Reproducible, in…Singularity: Scientific containers for mobility of compute (2017)Singularity: Scientific conta…BioContainers: an open-source and community-driven framework for software standardization (2017)BioContainers: an open-source…BIDS apps: Improving ease of use, accessibility, and reproducibility of neuroimaging data analysis methods (2017)BIDS apps: Improving ease of …What does research reproducibility mean? (2016)What does research reproducib…The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2016 update (2016)The Galaxy platform for acces…Reproducibility of neuroimaging analyses across operating systems (2015)Reproducibility of neuroimagi…Promoting an open research culture (2015)Promoting an open research cu…Automatic analysis (aa): efficient neuroimaging workflows and parallel processing using Matlab and XML (2015)Automatic analysis (aa): effi…An introduction to Docker for reproducible research (2015)An introduction to Docker for…Nipype: A Flexible, Lightweight and Extensible Neuroimaging Data Processing Framework in Python (2011)Nipype: A Flexible, Lightweig…niimath and fslmaths: Replication as a method to enhance popular neuroimaging tools (2024)niimath and fslmaths: Replica…Accessible computing platforms democratize neuroimaging data analysis (2024)Accessible computing platform…Reproducible Research in Computational Science (2011)Computational Reproducibility in Archaeological Research: Basic Principles and a Case Study of Their Implementation (2016)Scientific workflows for computational reproducibility in the life sciences: Status, challenges and opportunities (2017)Automated assessment of psychiatric disorders using speech: A systematic review (2020)Child Maltreatment and Neural Systems Underlying Emotion Regulation (2015)How open science helps researchers succeed (2016)Beyond the 30-Million-Word Gap: Children’s Conversational Exposure Is Associated With Language-Related Brain Function (2018)Two new Later Stone Age sites from the Final Pleistocene in the Falémé Valley, eastern Senegal (2024)Galaxy: A platform for interactive large-scale genome analysis (2005)Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences (2010)Bioconda: sustainable and comprehensive software distribution for the life sciences (2018)Policy: NIH plans to enhance reproducibility (2014)A solution to minimum sample size for regressions (2020)CONSORT 2025 statement: updated guideline for reporting randomised trials (2025)CONSORT 2025 statement: updated guideline for reporting randomised trials (2025)The Taverna workflow suite: designing and executing workflows of Web Services on the desktop, web or in the cloud (2013)Towards FAIR principles for research software (2019)Towards reproducible computational drug discovery (2020)Reproducible, scalable, and shareable analysis pipelines with bioinformatics workflow managers (2021)False-Positive Psychology (2011)P-curve: A key to the file-drawer. (2013)The New Statistics (2013)Making replication mainstream (2017)The association between adolescent well-being and digital technology use (2019)Construct validity in psychological tests. (1955)A power primer. (1992)Why Most Published Research Findings Are False (2005)Reducing bias, increasing transparency and calibrating confidence with preregistration (2023)Self-determination and attitudes toward artificial intelligence: Cross-national and longitudinal perspectives (2023)The replication crisis has led to positive structural, procedural, and community changes (2023)Estimating the reproducibility of psychological science (2015)A manifesto for reproducible science (2017)Meta-analysis and the science of research synthesis (2018)Sustainable data analysis with Snakemake (2021)The nf-core framework for community-curated bioinformatics pipelines (2020)Sustainable data analysis with Snakemake (2021)
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References

  • 2018The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2018 update3,659 cited
  • 2017Singularity: Scientific containers for mobility of compute2,734 cited
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  • 2011Nipype: A Flexible, Lightweight and Extensible Neuroimaging Data Processing Framework in Python2,202 cited
  • 2016The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2016 update2,149 cited
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  • 2017BIDS apps: Improving ease of use, accessibility, and reproducibility of neuroimaging data analysis methods311 cited
  • 2018Binder 2.0 - Reproducible, interactive, sharable environments for science at scale302 cited
  • 2015Automatic analysis (aa): efficient neuroimaging workflows and parallel processing using Matlab and XML

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148 cited
  • 2015Reproducibility of neuroimaging analyses across operating systems137 cited
  • 2021Clinica: An Open-Source Software Platform for Reproducible Clinical Neuroscience Studies128 cited
  • Cited by

    • 2024niimath and fslmaths: Replication as a method to enhance popular neuroimaging tools7 cited
    • 2024Accessible computing platforms democratize neuroimaging data analysis5 cited