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CREDO: a friendly Customizable, REproducible, DOcker file generator for bioinformatics applications
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CREDO: a friendly Customizable, REproducible, DOcker file generator for bioinformatics applications (2024)CREDO: a friendly Customizable, REproduci…A Survey of Biological Data in a Big Data Perspective (2022)A Survey of Biological Data i…Ten simple rules for writing Dockerfiles for reproducible data science (2020)Ten simple rules for writing …Recommendations to enhance rigor and reproducibility in biomedical research (2020)Recommendations to enhance ri…Evolution and impact of bias in human and machine learning algorithm interaction (2020)Evolution and impact of bias …Reproducible bioinformatics project: a community for reproducible bioinformatics analysis pipelines (2018)Reproducible bioinformatics p…Snakemake—a scalable bioinformatics workflow engine (2012)Snakemake—a scalable bioinfor…Bioconductor: open software development for computational biology and bioinformatics (2004)Bioconductor: open software d…Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences (2010)Nextflow enables reproducible computational workflows (2017)Bioconda: sustainable and comprehensive software distribution for the life sciences (2018)Sustainable data analysis with Snakemake (2021)Ten Simple Rules for Reproducible Computational Research (2013)1,500 scientists lift the lid on reproducibility (2016)Bulker: a multi-container environment manager (2019)Towards Reproducible Bioinformatics: The OpenBio-C Scientific Workflow Environment (2019)Laniakea@ReCaS: exploring the potential of customisable Galaxy on-demand instances as a cloud-based service (2021)Tools and techniques for computational reproducibility (2016)A Synthesis of the Formats for Correcting Erroneous and Fraudulent Academic Literature, and Associated Challenges (2022)The five pillars of computational reproducibility: bioinformatics and beyond (2023)Computational reproducibility of Jupyter notebooks from biomedical publications (2024)Elimination by aspects: A theory of choice. (1972)Context theory of classification learning. (1978)Big Data's Disparate Impact (2014)Detection and Evaluation of Machine Learning Bias (2021)AI ethical biases: normative and information systems development conceptual framework (2022)Advancing algorithmic bias management capabilities in AI-driven marketing analytics research (2023)An introduction to Docker for reproducible research (2015)Singularity: Scientific containers for mobility of compute (2017)Consensus-based guidance for conducting and reporting multi-analyst studies (2021)Containers for computational reproducibility (2023)Computational solutions to large-scale data management and analysis (2010)The big challenges of big data (2013)Data-intensive applications, challenges, techniques and technologies: A survey on Big Data (2014)Integrated data-driven biotechnology research environments (2025)Text Mining Infrastructure in R (2008)A Draft Sequence of the Neandertal Genome (2010)
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References

  • 2004Bioconductor: open software development for computational biology and bioinformatics12,180 cited
  • 2012Snakemake—a scalable bioinformatics workflow engine2,775 cited
  • 2020Recommendations to enhance rigor and reproducibility in biomedical research154 cited
  • 2020Evolution and impact of bias in human and machine learning algorithm interaction116 cited
  • 2020Ten simple rules for writing Dockerfiles for reproducible data science107 cited
  • 2018Reproducible bioinformatics project: a community for reproducible bioinformatics analysis pipelines61 cited
  • 2022A Survey of Biological Data in a Big Data Perspective17 cited

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