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The simulation experiment description markup language (SED-ML): language specification for level 1 version 5
6 references·0 citing·14 second hop
The simulation experiment description markup language (SED-ML): language specification for level 1 version 5 (2024)The simulation experiment description mar…The simulation experiment description markup language (SED-ML): language specification for level 1 version 4 (2021)The simulation experiment des…SED-ML web tools: generate, modify and export standard-compliant simulation studies (2016)SED-ML web tools: generate, m…OpenCOR: a modular and interoperable approach to computational biology (2015)OpenCOR: a modular and intero…COMBINE archive and OMEX format: one file to share all information to reproduce a modeling project (2014)COMBINE archive and OMEX form…Reproducible computational biology experiments with SED-ML - The Simulation Experiment Description Markup Language (2011)Reproducible computational bi…Minimum Information About a Simulation Experiment (MIASE) (2011)Minimum Information About a S…Promoting Coordinated Development of Community-Based Information Standards for Modeling in Biology: The COMBINE Initiative (2015)Best Practices for Making Reproducible Biochemical Models (2020)RunBioSimulations: an extensible web application that simulates a wide range of computational modeling frameworks, algorithms, and formats (2021)A standard protocol for describing individual-based and agent-based models (2006)Accessible Reproducible Research (2010)Ten Simple Rules for Reproducible Computational Research (2013)Proceedings of the 2017 Winter Simulation Conference (2017)Tellurium notebooks—An environment for reproducible dynamical modeling in systems biology (2018)Reporting guidelines for simulation‐based research in social sciences (2012)Strengthening the reporting of empirical simulation studies: Introducing the STRESS guidelines (2018)Reproducibility in systems biology modelling (2021)A demonstration of modularity, reuse, reproducibility, portability and scalability for modeling and simulation of cardiac electrophysiology using Kepler Workflows (2019)Specifications of standards in systems and synthetic biology: status and developments in 2021 (2021)ENCORE: a practical implementation to improve reproducibility and transparency of computational research (2024)
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References

  • 2011Reproducible computational biology experiments with SED-ML - The Simulation Experiment Description Markup Language257 cited
  • 2014COMBINE archive and OMEX format: one file to share all information to reproduce a modeling project170 cited
  • 2011Minimum Information About a Simulation Experiment (MIASE)168 cited
  • 2015OpenCOR: a modular and interoperable approach to computational biology115 cited
  • 2021The simulation experiment description markup language (SED-ML): language specification for level 1 version 417 cited
  • 2016SED-ML web tools: generate, modify and export standard-compliant simulation studies9 cited

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