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Genomic reproducibility in the bioinformatics era
8 references·1 citing·41 second hop
Genomic reproducibility in the bioinformatics era (2024)Genomic reproducibility in the bioinforma…The fundamental principles of reproducibility (2021)The fundamental principles of…Recommendations to enhance rigor and reproducibility in biomedical research (2020)Recommendations to enhance ri…A taxonomy for reproducible and replicable research in environmental modelling (2020)A taxonomy for reproducible a…Systematic benchmarking of omics computational tools (2019)Systematic benchmarking of om…Essential guidelines for computational method benchmarking (2019)Essential guidelines for comp…Challenges and recommendations to improve the installability and archival stability of omics computational tools (2019)Challenges and recommendation…What does research reproducibility mean? (2016)What does research reproducib…Replication (2014)ReplicationHow to make big data accessible to plant biologists and beyond: Ten years of lessons from TBtools (2026)How to make big data accessib…Policy: NIH plans to enhance reproducibility (2014)The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2016 update (2016)A solution to minimum sample size for regressions (2020)CONSORT 2025 statement: updated guideline for reporting randomised trials (2025)CONSORT 2025 statement: updated guideline for reporting randomised trials (2025)1,500 scientists lift the lid on reproducibility (2016)A review of bioinformatic pipeline frameworks (2016)Essential guidelines for computational method benchmarking (2019)Over-optimism in benchmark studies and the multiplicity of design and analysis options when interpreting their results (2021)Packaging and containerization of computational methods (2024)Bioconductor: open software development for computational biology and bioinformatics (2004)Big Data: Astronomical or Genomical? (2015)Bioconda: sustainable and comprehensive software distribution for the life sciences (2018)Successes and Struggles with Computational Reproducibility: Lessons from the Fragile Families Challenge (2019)A Practical Guide to Metabolomics Software Development (2021)The five pillars of computational reproducibility: bioinformatics and beyond (2023)Why Most Published Research Findings Are False (2005)Why Most Published Research Findings Are False (2005)The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2018 update (2018)Sustained software development, not number of citations or journal choice, is indicative of accurate bioinformatic software (2022)Geographical-XGBoost: a new ensemble model for spatially local regression based on gradient-boosted trees (2025)Ten Simple Rules for Reproducible Computational Research (2013)Tools and techniques for computational reproducibility (2016)A Synthesis of the Formats for Correcting Erroneous and Fraudulent Academic Literature, and Associated Challenges (2022)Computational reproducibility of Jupyter notebooks from biomedical publications (2024)Reproducible Research in Computational Science (2011)Singularity: Scientific containers for mobility of compute (2017)How to Improve the Reproducibility, Replicability, and Extensibility of Remote Sensing Research (2022)Reproducible Notebook Containers using Application Virtualization (2022)How to conduct more systematic reviews of agent-based models and foster theory development - Taking stock and looking ahead (2023)Conjectures and Refutations: The Growth of Scientific Knowledge. (1964)Conjectures and Refutations: The Growth of Scientific Knowledge. (1965)Statistics and Chemometrics for Analytical Chemistry (2005)Do machine learning platforms provide out-of-the-box reproducibility? (2021)Reproducibility in machine‐learning‐based research: Overview, barriers, and drivers (2025)What is reproducibility in artificial intelligence and machine learning research? (2025)A Quick Guide to Organizing Computational Biology Projects (2009)The big challenges of big data (2013)Nested designs (2014)Exact replication: Foundation of science or game of chance? (2019)Establishing Institutional Scores With the Rigor and Transparency Index: Large-scale Analysis of Scientific Reporting Quality (2022)
this work references cited by second hop

References

  • 2016What does research reproducibility mean?1,291 cited
  • 2014Replication212 cited
  • 2019Essential guidelines for computational method benchmarking198 cited
  • 2019Systematic benchmarking of omics computational tools167 cited
  • 2020Recommendations to enhance rigor and reproducibility in biomedical research154 cited
  • 2021The fundamental principles of reproducibility92 cited
  • 2019Challenges and recommendations to improve the installability and archival stability of omics computational tools90 cited
  • 2020A taxonomy for reproducible and replicable research in environmental modelling43 cited

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  • 2026How to make big data accessible to plant biologists and beyond: Ten years of lessons from TBtools10 cited

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